| Workflow | Description |
|---|---|
| Quality Control | scRNA-seq analysis through Cell-ranger and QC through Seurat |
| DoubletFinder | Optional: Find doublets |
| Individual-sample processing | Analysis of individual sample through Seurat |
| Integration-scTransform | Integrate data with scTransform |
| marker_and_DE Genes | Detection of marker and DE genes across clusters and treatments |
| scRNAseq_Pathways | Pathway Enrichment Analysis for each cluster |
| Workflow | Description |
|---|---|
| GSEA_plots | Create dotplot and barplot of enriched GSEA categories |
| Venn Diagram | Create venn diagram from lists |
| Workflow | Description |
|---|---|
| Customized downloading of TCGA/GTEX data | Download custom data from TCGA/GTEX using recount3 |
| Human_canine-transcriptome-comparison | Direct comparison of Human-canine transcriptomics data |