build/bin/write-dockerfile.sh: Add commands to activate conda env

build/bin/write-dockerfile.sh

@@ -36,6 +36,7 @@ done
 echo "# Automatically generated by SAGE_ROOT/build/bin/write-dockerfile.sh"
 echo "# the :comments: separate the generated file into sections"
 echo "# to simplify writing scripts that customize this file"
+RUN=RUN
 case $SYSTEM in
     debian*|ubuntu*)
         cat <<EOF
@@ -69,11 +70,13 @@ ARG USE_CONDARC=condarc.yml
 ADD *condarc*.yml /tmp/
 RUN echo \${CONDARC}; cd /tmp && conda config --stdin < \${USE_CONDARC}
 RUN conda update -n base conda
+RUN ln -sf /bin/bash /bin/sh
 EOF
         INSTALL="conda install --update-all --quiet --yes"
         EXISTS="2>/dev/null >/dev/null conda search -f"
         #EXISTS="conda search -f"
         CLEAN="&& conda info; conda list"
+        RUN="RUN . /opt/conda/etc/profile.d/conda.sh; conda activate base; "  # to activate the conda env
         ;;
     *)
         echo "Not implemented: package installation for SYSTEM=$SYSTEM" >&2
@@ -126,7 +129,7 @@ ADD Makefile VERSION.txt README.md bootstrap configure.ac sage ./
 ADD m4 ./m4
 ADD build ./build
 ADD src/bin/sage-version.sh src/bin/sage-version.sh
-RUN ./bootstrap
+$RUN ./bootstrap
 #:configuring:
 ADD src/ext src/ext
 ADD src/bin src/bin
@@ -135,11 +138,11 @@ ARG EXTRA_CONFIGURE_ARGS=""
 EOF
 if [ ${WITH_SYSTEM_SPKG} = "force" ]; then
     cat <<EOF
-RUN echo "****** Configuring: ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} *******"; ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} || (echo "********** configuring without forcing ***********"; cat config.log; ./configure --enable-build-as-root; cat config.log; exit 1)
+$RUN echo "****** Configuring: ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} *******"; ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} || (echo "********** configuring without forcing ***********"; cat config.log; ./configure --enable-build-as-root; cat config.log; exit 1)
 EOF
 else
     cat <<EOF
-RUN echo "****** Configuring: ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} *******"; ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} || (cat config.log; exit 1)
+$RUN echo "****** Configuring: ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} *******"; ./configure --enable-build-as-root $CONFIGURE_ARGS \${EXTRA_CONFIGURE_ARGS} || (cat config.log; exit 1)
 EOF
 fi
 cat <<EOF
@@ -148,12 +151,12 @@ ARG NUMPROC=8
 ENV MAKE="make -j\${NUMPROC}"
 ARG USE_MAKEFLAGS="-k"
 #:toolchain:
-RUN make \${USE_MAKEFLAGS} base-toolchain
+$RUN make \${USE_MAKEFLAGS} base-toolchain
 #:make:
 # Avoid running the lengthy testsuite of the following.
-RUN make \${USE_MAKEFLAGS} cython
+$RUN make \${USE_MAKEFLAGS} cython
 # By default, compile something tricky but that does not take too long. scipy uses BLAS.
 ARG TARGETS="scipy"
-RUN SAGE_CHECK=yes SAGE_CHECK_PACKAGES="!r,!python3,!python2,!nose" make \${USE_MAKEFLAGS} \${TARGETS}
+$RUN SAGE_CHECK=yes SAGE_CHECK_PACKAGES="!r,!python3,!python2,!nose" make \${USE_MAKEFLAGS} \${TARGETS}
 #:end:
 EOF