Implement Unsupervised Outlier Detection with LOF #588
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Java 17 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: adopt | |
| java-version: 17 | |
| - name: Install Merlion | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel build | |
| python -m pip install pytest coverage | |
| python -m build | |
| for f in dist/*.whl; do python -m pip install $f[all]; done | |
| python -m pip install -e ts_datasets/ | |
| - name: Test with pytest | |
| id: test | |
| uses: nick-fields/retry@v2 | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| with: | |
| max_attempts: 1 | |
| timeout_minutes: 60 | |
| retry_on: error | |
| command: | | |
| set -euxo pipefail | |
| # Get a comma-separated list of the directories of all python source files | |
| files=$(for f in $(find merlion -iname "*.py"); do echo -n ",$f"; done) | |
| script="import os; print(','.join({os.path.dirname(f) for f in '$files'.split(',') if f}))" | |
| source_modules=$(python -c "$script") | |
| # Run tests & obtain code coverage from coverage report. | |
| coverage run --source=${source_modules} --omit=merlion/dashboard/* -L -m pytest -v -s | |
| coverage report && coverage xml -o .github/badges/coverage.xml | |
| COVERAGE=`coverage report | grep "TOTAL" | grep -Eo "[0-9\.]+%"` | |
| echo "coverage=${COVERAGE}" >> $GITHUB_OUTPUT | |
| # Choose a color based on code coverage | |
| COVERAGE=${COVERAGE/\%/} | |
| if (($COVERAGE > 90)); then | |
| COLOR=brightgreen | |
| elif (($COVERAGE > 80)); then | |
| COLOR=green | |
| elif (($COVERAGE > 70)); then | |
| COLOR=yellow | |
| elif (($COVERAGE > 60)); then | |
| COLOR=orange | |
| else | |
| COLOR=red | |
| fi | |
| echo "color=${COLOR}" >> $GITHUB_OUTPUT | |
| - name: Create coverage badge | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| uses: emibcn/badge-action@v1.2.1 | |
| with: | |
| label: coverage | |
| status: ${{ steps.test.outputs.coverage }} | |
| color: ${{ steps.test.outputs.color }} | |
| path: .github/badges/coverage.svg | |
| - name: Push badge to badges branch | |
| uses: s0/git-publish-subdir-action@v2.5.1 | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| env: | |
| REPO: self | |
| BRANCH: badges | |
| FOLDER: .github/badges | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| tests_windows: | |
| runs-on: windows-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Java 17 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: microsoft | |
| java-version: 17 | |
| - name: Install Merlion | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel build pytest | |
| python -m pip install ".[all]" | |
| python -m pip install -e ts_datasets/ | |
| - name: Test with pytest | |
| id: test | |
| run: pytest -v -s --ignore=tests/spark |