vcfmerge: Fix error message, correct chr name must be printed

See #284 (comment)
samtools · Nov 6, 2015 · 7564362 · 7564362
1 parent edca051
commit 7564362
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vcfmerge.c b/vcfmerge.c
@@ -1774,7 +1774,7 @@ void merge_buffer(args_t *args)
 
             // normalize alleles
             maux->als = merge_alleles(line->d.allele, line->n_allele, maux->d[i][j].map, maux->als, &maux->nals, &maux->mals);
-            if ( !maux->als ) error("Failed to merge alleles at %s:%d in %s\n",bcf_seqname(args->out_hdr,line),line->pos+1,reader->fname);
+            if ( !maux->als ) error("Failed to merge alleles at %s:%d in %s\n",bcf_seqname(bcf_sr_get_header(args->files,j),line),line->pos+1,reader->fname);
             hts_expand0(int, maux->nals, maux->ncnt, maux->cnt);
             for (k=1; k<line->n_allele; k++)
                 maux->cnt[ maux->d[i][j].map[k] ]++;    // how many times an allele appears in the files