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Update mpileup differences caused by randomized overlap removal in sa…
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…mtools/htslib#1273
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@pd3
pd3 committed Apr 27, 2021
1 parent c376591 commit a865a16
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Showing 10 changed files with 531 additions and 530 deletions.
289 changes: 145 additions & 144 deletions test/mpileup/indel-AD.1.out
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66 changes: 33 additions & 33 deletions test/mpileup/mpileup.1.out
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Original file line number Diff line number Diff line change
Expand Up @@ -17,39 +17,39 @@
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00100 HG00101 HG00102
17 100 . C <*> 0 . DP=18;I16=17,0,0,0,688,29762,0,0,958,55682,0,0,332,7446,0,0;QS=3,0;MQ0F=0 PL 0,27,189 0,9,108 0,15,134
17 101 . C <*> 0 . DP=18;I16=17,0,0,0,650,27530,0,0,958,55682,0,0,331,7303,0,0;QS=3,0;MQ0F=0 PL 0,27,182 0,9,99 0,15,132
17 102 . C <*> 0 . DP=18;I16=17,0,0,0,695,30453,0,0,958,55682,0,0,330,7178,0,0;QS=3,0;MQ0F=0 PL 0,27,188 0,9,111 0,15,139
17 103 . T <*> 0 . DP=18;I16=16,0,0,0,692,31998,0,0,929,54841,0,0,323,7035,0,0;QS=3,0;MQ0F=0 PL 0,24,189 0,9,108 0,15,147
17 104 . G <*> 0 . DP=18;I16=15,0,0,0,611,26723,0,0,900,54000,0,0,295,6259,0,0;QS=3,0;MQ0F=0 PL 0,24,178 0,6,89 0,15,133
17 105 . G <*> 0 . DP=19;I16=17,0,0,0,604,23936,0,0,989,58441,0,0,317,6751,0,0;QS=3,0;MQ0F=0 PL 0,27,170 0,9,97 0,15,125
17 106 . G <*> 0 . DP=19;I16=17,0,0,0,644,26574,0,0,989,58441,0,0,299,6093,0,0;QS=3,0;MQ0F=0 PL 0,30,190 0,6,85 0,15,124
17 107 . C <*> 0 . DP=19;I16=17,0,0,0,694,30064,0,0,989,58441,0,0,313,6543,0,0;QS=3,0;MQ0F=0 PL 0,27,192 0,9,108 0,15,136
17 108 . C <*> 0 . DP=19;I16=17,0,0,0,692,30148,0,0,989,58441,0,0,310,6420,0,0;QS=3,0;MQ0F=0 PL 0,27,190 0,9,108 0,15,135
17 109 . T <*> 0 . DP=19;I16=17,0,0,0,741,34273,0,0,989,58441,0,0,307,6319,0,0;QS=3,0;MQ0F=0 PL 0,27,195 0,9,110 0,15,150
17 110 . G <*> 0 . DP=19;I16=17,0,0,0,704,31276,0,0,989,58441,0,0,304,6240,0,0;QS=3,0;MQ0F=0 PL 0,27,194 0,9,104 0,15,136
17 111 . G <*> 0 . DP=19;I16=16,0,0,0,584,24362,0,0,929,54841,0,0,272,5416,0,0;QS=3,0;MQ0F=0 PL 0,30,167 0,6,88 0,12,118
17 112 . C <*> 0 . DP=19;I16=17,0,0,0,680,29854,0,0,989,58441,0,0,296,6052,0,0;QS=3,0;MQ0F=0 PL 0,27,191 0,9,95 0,15,135
17 113 . A <*> 0 . DP=19;I16=16,0,0,0,645,28035,0,0,960,57600,0,0,266,5318,0,0;QS=3,0;MQ0F=0 PL 0,27,176 0,6,87 0,15,139
17 114 . C <*> 0 . DP=19;I16=17,0,0,0,674,28788,0,0,989,58441,0,0,286,5856,0,0;QS=3,0;MQ0F=0 PL 0,27,182 0,9,103 0,15,133
17 115 . C <*> 0 . DP=21;I16=18,0,0,0,708,30546,0,0,1049,62041,0,0,274,5490,0,0;QS=3,0;MQ0F=0 PL 0,30,189 0,6,89 0,18,147
17 116 . A <*> 0 . DP=21;I16=17,1,0,0,727,31755,0,0,1049,62041,0,0,253,5079,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,183 0,6,90 0,21,175
17 117 . G <*> 0 . DP=21;I16=17,1,0,0,712,30478,0,0,1049,62041,0,0,249,5019,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,183 0,6,85 0,21,177
17 118 . G <*> 0 . DP=20;I16=16,1,0,0,636,26574,0,0,958,55682,0,0,266,5426,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,175 0,3,60 0,21,162
17 119 . G <*> 0 . DP=19;I16=16,1,0,0,629,26439,0,0,958,55682,0,0,267,5553,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,175 0,6,73 0,21,160
17 120 . A <*> 0 . DP=19;I16=16,1,0,0,672,29188,0,0,958,55682,0,0,264,5518,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,175 0,6,83 0,21,171
17 121 . G <*> 0 . DP=19;I16=16,1,0,0,662,28460,0,0,958,55682,0,0,260,5454,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,181 0,6,80 0,21,168
17 122 . C <*> 0 . DP=20;I16=17,1,0,0,716,31224,0,0,1018,59282,0,0,256,5410,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,181 0,9,99 0,21,178
17 123 . T <*> 0 . DP=18;I16=15,1,0,0,661,29997,0,0,898,52082,0,0,255,5385,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,21,167 0,9,112 0,18,166
17 124 . T <*> 0 . DP=19;I16=17,1,0,0,626,24802,0,0,987,56523,0,0,279,6003,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,154 0,9,104 0,18,154
17 125 . A <*> 0 . DP=18;I16=15,1,0,0,611,25689,0,0,898,52082,0,0,254,5340,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,21,154 0,9,104 0,18,162
17 126 . A <*> 0 . DP=18;I16=16,1,0,0,648,27366,0,0,927,52923,0,0,279,5947,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,162 0,9,107 0,18,174
17 127 . C <*> 0 . DP=18;I16=16,1,0,0,646,26972,0,0,927,52923,0,0,279,5949,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,163 0,9,109 0,18,160
17 128 . A <*> 0 . DP=18;I16=16,1,0,0,673,28797,0,0,927,52923,0,0,279,5971,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,169 0,9,111 0,18,162
17 129 . A <*> 0 . DP=17;I16=15,1,0,0,645,27891,0,0,867,49323,0,0,280,6012,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,168 0,9,113 0,15,159
17 130 . A <*> 0 . DP=17;I16=15,1,0,0,641,27295,0,0,867,49323,0,0,281,6071,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,169 0,9,113 0,15,152
17 131 . C <*> 0 . DP=16;I16=14,1,0,0,606,25732,0,0,838,48482,0,0,256,5472,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,21,167 0,9,110 0,15,147
17 132 . A <*> 0 . DP=16;I16=14,1,0,0,627,27579,0,0,838,48482,0,0,256,5514,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,21,169 0,9,110 0,15,151
17 100 . C <*> 0 . DP=18;I16=16,1,0,0,688,29762,0,0,958,55682,0,0,332,7446,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,189 0,9,118 0,15,134
17 101 . C <*> 0 . DP=18;I16=16,1,0,0,650,27530,0,0,958,55682,0,0,331,7303,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,182 0,9,108 0,15,132
17 102 . C <*> 0 . DP=18;I16=16,1,0,0,695,30453,0,0,958,55682,0,0,330,7178,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,188 0,9,121 0,15,139
17 103 . T <*> 0 . DP=18;I16=15,1,0,0,692,31998,0,0,929,54841,0,0,323,7035,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,189 0,9,118 0,15,147
17 104 . G <*> 0 . DP=18;I16=14,1,0,0,611,26723,0,0,900,54000,0,0,295,6259,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,24,178 0,6,95 0,15,133
17 105 . G <*> 0 . DP=19;I16=16,1,0,0,604,23936,0,0,989,58441,0,0,317,6751,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,170 0,9,106 0,15,125
17 106 . G <*> 0 . DP=19;I16=16,1,0,0,644,26574,0,0,989,58441,0,0,299,6093,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,30,190 0,6,91 0,15,124
17 107 . C <*> 0 . DP=19;I16=16,1,0,0,694,30064,0,0,989,58441,0,0,313,6543,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,192 0,9,119 0,15,136
17 108 . C <*> 0 . DP=19;I16=16,1,0,0,692,30148,0,0,989,58441,0,0,311,6469,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,190 0,9,119 0,15,135
17 109 . T <*> 0 . DP=19;I16=16,1,0,0,741,34273,0,0,989,58441,0,0,309,6415,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,195 0,9,120 0,15,150
17 110 . G <*> 0 . DP=19;I16=16,1,0,0,704,31276,0,0,989,58441,0,0,307,6381,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,194 0,9,113 0,15,136
17 111 . G <*> 0 . DP=19;I16=15,1,0,0,584,24362,0,0,929,54841,0,0,276,5600,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,30,167 0,6,94 0,12,118
17 112 . C <*> 0 . DP=19;I16=16,1,0,0,680,29854,0,0,989,58441,0,0,301,6277,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,191 0,9,103 0,15,135
17 113 . A <*> 0 . DP=19;I16=15,1,0,0,645,28035,0,0,960,57600,0,0,272,5582,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,176 0,6,93 0,15,139
17 114 . C <*> 0 . DP=19;I16=16,1,0,0,674,28788,0,0,989,58441,0,0,293,6157,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,27,182 0,9,113 0,15,133
17 115 . C <*> 0 . DP=21;I16=17,1,0,0,708,30546,0,0,1049,62041,0,0,282,5826,0,0;QS=3,0;MQSB=1;MQ0F=0 PL 0,30,189 0,6,95 0,18,147
17 116 . A <*> 0 . DP=21;I16=16,2,0,0,727,31755,0,0,1049,62041,0,0,262,5448,0,0;QS=3,0;MQSB=0.5;MQ0F=0 PL 0,27,183 0,6,96 0,21,175
17 117 . G <*> 0 . DP=21;I16=16,2,0,0,712,30478,0,0,1049,62041,0,0,259,5419,0,0;QS=3,0;MQSB=0.5;MQ0F=0 PL 0,27,183 0,6,91 0,21,177
17 118 . G <*> 0 . DP=20;I16=15,2,0,0,636,26574,0,0,958,55682,0,0,277,5855,0,0;QS=3,0;MQSB=0.566667;MQ0F=0 PL 0,27,175 0,3,60 0,21,162
17 119 . G <*> 0 . DP=19;I16=15,2,0,0,629,26439,0,0,958,55682,0,0,279,6009,0,0;QS=3,0;MQSB=0.566667;MQ0F=0 PL 0,24,175 0,6,76 0,21,160
17 120 . A <*> 0 . DP=19;I16=15,2,0,0,672,29188,0,0,958,55682,0,0,277,5999,0,0;QS=3,0;MQSB=0.566667;MQ0F=0 PL 0,24,175 0,6,88 0,21,171
17 121 . G <*> 0 . DP=19;I16=15,2,0,0,662,28460,0,0,958,55682,0,0,274,5958,0,0;QS=3,0;MQSB=0.566667;MQ0F=0 PL 0,24,181 0,6,84 0,21,168
17 122 . C <*> 0 . DP=20;I16=16,2,0,0,716,31224,0,0,1018,59282,0,0,271,5935,0,0;QS=3,0;MQSB=0.5625;MQ0F=0 PL 0,24,181 0,9,107 0,21,178
17 123 . T <*> 0 . DP=18;I16=14,2,0,0,661,29997,0,0,898,52082,0,0,271,5929,0,0;QS=3,0;MQSB=0.571429;MQ0F=0 PL 0,21,167 0,9,123 0,18,166
17 124 . T <*> 0 . DP=19;I16=16,2,0,0,626,24802,0,0,987,56523,0,0,296,6564,0,0;QS=3,0;MQSB=0.625;MQ0F=0 PL 0,27,154 0,9,114 0,18,154
17 125 . A <*> 0 . DP=18;I16=14,2,0,0,611,25689,0,0,898,52082,0,0,272,5916,0,0;QS=3,0;MQSB=0.571429;MQ0F=0 PL 0,21,154 0,9,114 0,18,162
17 126 . A <*> 0 . DP=18;I16=15,2,0,0,648,27366,0,0,927,52923,0,0,298,6536,0,0;QS=3,0;MQSB=0.633333;MQ0F=0 PL 0,24,162 0,9,117 0,18,174
17 127 . C <*> 0 . DP=18;I16=15,2,0,0,646,26972,0,0,927,52923,0,0,299,6549,0,0;QS=3,0;MQSB=0.633333;MQ0F=0 PL 0,24,163 0,9,119 0,18,160
17 128 . A <*> 0 . DP=18;I16=15,2,0,0,673,28797,0,0,927,52923,0,0,300,6580,0,0;QS=3,0;MQSB=0.633333;MQ0F=0 PL 0,24,169 0,9,121 0,18,162
17 129 . A <*> 0 . DP=17;I16=14,2,0,0,645,27891,0,0,867,49323,0,0,302,6628,0,0;QS=3,0;MQSB=0.642857;MQ0F=0 PL 0,24,168 0,9,124 0,15,159
17 130 . A <*> 0 . DP=17;I16=14,2,0,0,641,27295,0,0,867,49323,0,0,304,6692,0,0;QS=3,0;MQSB=0.642857;MQ0F=0 PL 0,24,169 0,9,124 0,15,152
17 131 . C <*> 0 . DP=16;I16=13,2,0,0,606,25732,0,0,838,48482,0,0,280,6096,0,0;QS=3,0;MQSB=0.576923;MQ0F=0 PL 0,21,167 0,9,120 0,15,147
17 132 . A <*> 0 . DP=16;I16=13,2,0,0,627,27579,0,0,838,48482,0,0,281,6139,0,0;QS=3,0;MQSB=0.576923;MQ0F=0 PL 0,21,169 0,9,120 0,15,151
17 133 . T <*> 0 . DP=15;I16=13,2,0,0,584,22816,0,0,838,48482,0,0,282,6196,0,0;QS=3,0;MQSB=0.576923;MQ0F=0 PL 0,21,163 0,9,105 0,15,150
17 134 . C <*> 0 . DP=15;I16=13,2,0,0,607,24653,0,0,838,48482,0,0,283,6267,0,0;QS=3,0;MQSB=0.576923;MQ0F=0 PL 0,21,177 0,9,105 0,15,152
17 135 . T <*> 0 . DP=15;I16=13,2,0,0,600,24178,0,0,838,48482,0,0,284,6352,0,0;QS=3,0;MQSB=0.576923;MQ0F=0 PL 0,21,173 0,9,106 0,15,156
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66 changes: 33 additions & 33 deletions test/mpileup/mpileup.10.out
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Original file line number Diff line number Diff line change
Expand Up @@ -17,39 +17,39 @@
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE1b HG00100 SAMPLE1a SAMPLE2 SAMPLE3
17 100 . C <*> 0 . DP=16;I16=15,0,0,0,609,26637,0,0,838,48482,0,0,310,7132,0,0;QS=5,0;MQ0F=0 PL 0,3,19 0,6,78 0,12,128 0,9,108 0,15,134
17 101 . C <*> 0 . DP=16;I16=15,0,0,0,587,25433,0,0,838,48482,0,0,309,7011,0,0;QS=5,0;MQ0F=0 PL 0,3,22 0,6,79 0,12,123 0,9,99 0,15,132
17 102 . C <*> 0 . DP=16;I16=15,0,0,0,621,27715,0,0,838,48482,0,0,308,6904,0,0;QS=5,0;MQ0F=0 PL 0,3,20 0,6,78 0,12,129 0,9,111 0,15,139
17 103 . T <*> 0 . DP=16;I16=14,0,0,0,612,28790,0,0,809,47641,0,0,301,6775,0,0;QS=4,0;MQ0F=0 PL 0,0,0 0,6,79 0,12,131 0,9,108 0,15,147
17 104 . G <*> 0 . DP=16;I16=13,0,0,0,546,24526,0,0,780,46800,0,0,273,6009,0,0;QS=4,0;MQ0F=0 PL 0,0,0 0,6,78 0,12,123 0,6,89 0,15,133
17 105 . G <*> 0 . DP=17;I16=15,0,0,0,542,21886,0,0,869,51241,0,0,295,6507,0,0;QS=5,0;MQ0F=0 PL 0,3,26 0,6,77 0,12,106 0,9,97 0,15,125
17 106 . G <*> 0 . DP=17;I16=15,0,0,0,570,23834,0,0,869,51241,0,0,277,5851,0,0;QS=5,0;MQ0F=0 PL 0,6,43 0,6,75 0,12,130 0,6,85 0,15,124
17 107 . C <*> 0 . DP=17;I16=15,0,0,0,614,26864,0,0,869,51241,0,0,291,6299,0,0;QS=5,0;MQ0F=0 PL 0,3,30 0,6,77 0,12,130 0,9,108 0,15,136
17 108 . C <*> 0 . DP=17;I16=15,0,0,0,615,27183,0,0,869,51241,0,0,288,6170,0,0;QS=5,0;MQ0F=0 PL 0,3,30 0,6,78 0,12,128 0,9,108 0,15,135
17 109 . T <*> 0 . DP=17;I16=15,0,0,0,664,31304,0,0,869,51241,0,0,285,6059,0,0;QS=5,0;MQ0F=0 PL 0,3,33 0,6,77 0,12,133 0,9,110 0,15,150
17 110 . G <*> 0 . DP=17;I16=15,0,0,0,624,28074,0,0,869,51241,0,0,282,5966,0,0;QS=5,0;MQ0F=0 PL 0,3,35 0,6,78 0,12,130 0,9,104 0,15,136
17 111 . G <*> 0 . DP=17;I16=14,0,0,0,514,21894,0,0,809,47641,0,0,250,5124,0,0;QS=5,0;MQ0F=0 PL 0,6,45 0,6,75 0,12,92 0,6,88 0,12,118
17 112 . C <*> 0 . DP=17;I16=15,0,0,0,600,26654,0,0,869,51241,0,0,274,5738,0,0;QS=5,0;MQ0F=0 PL 0,3,30 0,6,77 0,12,129 0,9,95 0,15,135
17 113 . A <*> 0 . DP=17;I16=14,0,0,0,575,25583,0,0,840,50400,0,0,244,4978,0,0;QS=5,0;MQ0F=0 PL 0,3,30 0,6,71 0,12,120 0,6,87 0,15,139
17 114 . C <*> 0 . DP=17;I16=15,0,0,0,595,25667,0,0,869,51241,0,0,264,5486,0,0;QS=5,0;MQ0F=0 PL 0,3,33 0,6,75 0,12,118 0,9,103 0,15,133
17 115 . C <*> 0 . DP=19;I16=16,0,0,0,635,27881,0,0,929,54841,0,0,252,5086,0,0;QS=5,0;MQ0F=0 PL 0,6,43 0,6,80 0,12,123 0,6,89 0,18,147
17 116 . A <*> 0 . DP=19;I16=15,1,0,0,653,29009,0,0,929,54841,0,0,231,4637,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,37 0,6,75 0,12,121 0,6,90 0,21,175
17 117 . G <*> 0 . DP=19;I16=15,1,0,0,642,27956,0,0,929,54841,0,0,227,4535,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,37 0,6,77 0,12,117 0,6,85 0,21,177
17 118 . G <*> 0 . DP=19;I16=15,1,0,0,599,25205,0,0,898,52082,0,0,243,4897,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,43 0,6,77 0,12,116 0,3,60 0,21,162
17 119 . G <*> 0 . DP=18;I16=15,1,0,0,591,24995,0,0,898,52082,0,0,243,4977,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,38 0,6,78 0,12,114 0,6,73 0,21,160
17 120 . A <*> 0 . DP=18;I16=15,1,0,0,634,27744,0,0,898,52082,0,0,239,4893,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,41 0,6,75 0,12,116 0,6,83 0,21,171
17 121 . G <*> 0 . DP=18;I16=15,1,0,0,631,27499,0,0,898,52082,0,0,235,4829,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,39 0,6,80 0,12,121 0,6,80 0,21,168
17 122 . C <*> 0 . DP=19;I16=16,1,0,0,675,29543,0,0,958,55682,0,0,231,4785,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,40 0,6,78 0,12,119 0,9,99 0,21,178
17 123 . T <*> 0 . DP=17;I16=14,1,0,0,624,28628,0,0,838,48482,0,0,230,4760,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,39 0,6,75 0,9,98 0,9,112 0,18,166
17 124 . T <*> 0 . DP=17;I16=15,1,0,0,567,23061,0,0,867,49323,0,0,254,5378,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,33 0,6,70 0,9,89 0,9,104 0,18,154
17 125 . A <*> 0 . DP=16;I16=13,1,0,0,544,23440,0,0,778,44882,0,0,228,4714,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,38 0,6,72 0,6,63 0,9,104 0,18,162
17 126 . A <*> 0 . DP=16;I16=14,1,0,0,577,24833,0,0,807,45723,0,0,252,5318,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,50 0,6,72 0,6,67 0,9,107 0,18,174
17 127 . C <*> 0 . DP=16;I16=14,1,0,0,573,24303,0,0,807,45723,0,0,251,5315,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,46 0,6,69 0,6,75 0,9,109 0,18,160
17 128 . A <*> 0 . DP=16;I16=14,1,0,0,601,26205,0,0,807,45723,0,0,250,5330,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,59 0,6,74 0,6,72 0,9,111 0,18,162
17 129 . A <*> 0 . DP=15;I16=13,1,0,0,576,25510,0,0,747,42123,0,0,250,5362,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,59 0,6,72 0,6,73 0,9,113 0,15,159
17 130 . A <*> 0 . DP=15;I16=13,1,0,0,570,24774,0,0,747,42123,0,0,250,5410,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,60 0,6,76 0,6,68 0,9,113 0,15,152
17 131 . C <*> 0 . DP=14;I16=12,1,0,0,530,22844,0,0,718,41282,0,0,224,4798,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,38 0,6,77 0,6,71 0,9,110 0,15,147
17 132 . A <*> 0 . DP=14;I16=12,1,0,0,552,24766,0,0,718,41282,0,0,223,4825,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,42 0,6,73 0,6,75 0,9,110 0,15,151
17 100 . C <*> 0 . DP=16;I16=14,1,0,0,609,26637,0,0,838,48482,0,0,310,7132,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,19 0,6,78 0,12,128 0,9,118 0,15,134
17 101 . C <*> 0 . DP=16;I16=14,1,0,0,587,25433,0,0,838,48482,0,0,309,7011,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,22 0,6,79 0,12,123 0,9,108 0,15,132
17 102 . C <*> 0 . DP=16;I16=14,1,0,0,621,27715,0,0,838,48482,0,0,308,6904,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,20 0,6,78 0,12,129 0,9,121 0,15,139
17 103 . T <*> 0 . DP=16;I16=13,1,0,0,612,28790,0,0,809,47641,0,0,301,6775,0,0;QS=4,0;MQSB=1;MQ0F=0 PL 0,0,0 0,6,79 0,12,131 0,9,118 0,15,147
17 104 . G <*> 0 . DP=16;I16=12,1,0,0,546,24526,0,0,780,46800,0,0,273,6009,0,0;QS=4,0;MQSB=1;MQ0F=0 PL 0,0,0 0,6,78 0,12,123 0,6,95 0,15,133
17 105 . G <*> 0 . DP=17;I16=14,1,0,0,542,21886,0,0,869,51241,0,0,295,6507,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,26 0,6,77 0,12,106 0,9,106 0,15,125
17 106 . G <*> 0 . DP=17;I16=14,1,0,0,570,23834,0,0,869,51241,0,0,277,5851,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,43 0,6,75 0,12,130 0,6,91 0,15,124
17 107 . C <*> 0 . DP=17;I16=14,1,0,0,614,26864,0,0,869,51241,0,0,291,6299,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,30 0,6,77 0,12,130 0,9,119 0,15,136
17 108 . C <*> 0 . DP=17;I16=14,1,0,0,615,27183,0,0,869,51241,0,0,289,6219,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,30 0,6,78 0,12,128 0,9,119 0,15,135
17 109 . T <*> 0 . DP=17;I16=14,1,0,0,664,31304,0,0,869,51241,0,0,287,6155,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,33 0,6,77 0,12,133 0,9,120 0,15,150
17 110 . G <*> 0 . DP=17;I16=14,1,0,0,624,28074,0,0,869,51241,0,0,285,6107,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,35 0,6,78 0,12,130 0,9,113 0,15,136
17 111 . G <*> 0 . DP=17;I16=13,1,0,0,514,21894,0,0,809,47641,0,0,254,5308,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,45 0,6,75 0,12,92 0,6,94 0,12,118
17 112 . C <*> 0 . DP=17;I16=14,1,0,0,600,26654,0,0,869,51241,0,0,279,5963,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,30 0,6,77 0,12,129 0,9,103 0,15,135
17 113 . A <*> 0 . DP=17;I16=13,1,0,0,575,25583,0,0,840,50400,0,0,250,5242,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,30 0,6,71 0,12,120 0,6,93 0,15,139
17 114 . C <*> 0 . DP=17;I16=14,1,0,0,595,25667,0,0,869,51241,0,0,271,5787,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,3,33 0,6,75 0,12,118 0,9,113 0,15,133
17 115 . C <*> 0 . DP=19;I16=15,1,0,0,635,27881,0,0,929,54841,0,0,260,5422,0,0;QS=5,0;MQSB=1;MQ0F=0 PL 0,6,43 0,6,80 0,12,123 0,6,95 0,18,147
17 116 . A <*> 0 . DP=19;I16=14,2,0,0,653,29009,0,0,929,54841,0,0,240,5006,0,0;QS=5,0;MQSB=0.5;MQ0F=0 PL 0,3,37 0,6,75 0,12,121 0,6,96 0,21,175
17 117 . G <*> 0 . DP=19;I16=14,2,0,0,642,27956,0,0,929,54841,0,0,237,4935,0,0;QS=5,0;MQSB=0.5;MQ0F=0 PL 0,3,37 0,6,77 0,12,117 0,6,91 0,21,177
17 118 . G <*> 0 . DP=19;I16=14,2,0,0,599,25205,0,0,898,52082,0,0,254,5326,0,0;QS=5,0;MQSB=0.571429;MQ0F=0 PL 0,6,43 0,6,77 0,12,116 0,3,60 0,21,162
17 119 . G <*> 0 . DP=18;I16=14,2,0,0,591,24995,0,0,898,52082,0,0,255,5433,0,0;QS=5,0;MQSB=0.571429;MQ0F=0 PL 0,3,38 0,6,78 0,12,114 0,6,76 0,21,160
17 120 . A <*> 0 . DP=18;I16=14,2,0,0,634,27744,0,0,898,52082,0,0,252,5374,0,0;QS=5,0;MQSB=0.571429;MQ0F=0 PL 0,3,41 0,6,75 0,12,116 0,6,88 0,21,171
17 121 . G <*> 0 . DP=18;I16=14,2,0,0,631,27499,0,0,898,52082,0,0,249,5333,0,0;QS=5,0;MQSB=0.571429;MQ0F=0 PL 0,3,39 0,6,80 0,12,121 0,6,84 0,21,168
17 122 . C <*> 0 . DP=19;I16=15,2,0,0,675,29543,0,0,958,55682,0,0,246,5310,0,0;QS=5,0;MQSB=0.566667;MQ0F=0 PL 0,3,40 0,6,78 0,12,119 0,9,107 0,21,178
17 123 . T <*> 0 . DP=17;I16=13,2,0,0,624,28628,0,0,838,48482,0,0,246,5304,0,0;QS=5,0;MQSB=0.576923;MQ0F=0 PL 0,3,39 0,6,75 0,9,98 0,9,123 0,18,166
17 124 . T <*> 0 . DP=17;I16=14,2,0,0,567,23061,0,0,867,49323,0,0,271,5939,0,0;QS=5,0;MQSB=0.642857;MQ0F=0 PL 0,6,33 0,6,70 0,9,89 0,9,114 0,18,154
17 125 . A <*> 0 . DP=16;I16=12,2,0,0,544,23440,0,0,778,44882,0,0,246,5290,0,0;QS=5,0;MQSB=0.583333;MQ0F=0 PL 0,3,38 0,6,72 0,6,63 0,9,114 0,18,162
17 126 . A <*> 0 . DP=16;I16=13,2,0,0,577,24833,0,0,807,45723,0,0,271,5907,0,0;QS=5,0;MQSB=0.653846;MQ0F=0 PL 0,6,50 0,6,72 0,6,67 0,9,117 0,18,174
17 127 . C <*> 0 . DP=16;I16=13,2,0,0,573,24303,0,0,807,45723,0,0,271,5915,0,0;QS=5,0;MQSB=0.653846;MQ0F=0 PL 0,6,46 0,6,69 0,6,75 0,9,119 0,18,160
17 128 . A <*> 0 . DP=16;I16=13,2,0,0,601,26205,0,0,807,45723,0,0,271,5939,0,0;QS=5,0;MQSB=0.653846;MQ0F=0 PL 0,6,59 0,6,74 0,6,72 0,9,121 0,18,162
17 129 . A <*> 0 . DP=15;I16=12,2,0,0,576,25510,0,0,747,42123,0,0,272,5978,0,0;QS=5,0;MQSB=0.666667;MQ0F=0 PL 0,6,59 0,6,72 0,6,73 0,9,124 0,15,159
17 130 . A <*> 0 . DP=15;I16=12,2,0,0,570,24774,0,0,747,42123,0,0,273,6031,0,0;QS=5,0;MQSB=0.666667;MQ0F=0 PL 0,6,60 0,6,76 0,6,68 0,9,124 0,15,152
17 131 . C <*> 0 . DP=14;I16=11,2,0,0,530,22844,0,0,718,41282,0,0,248,5422,0,0;QS=5,0;MQSB=0.590909;MQ0F=0 PL 0,3,38 0,6,77 0,6,71 0,9,120 0,15,147
17 132 . A <*> 0 . DP=14;I16=11,2,0,0,552,24766,0,0,718,41282,0,0,248,5450,0,0;QS=5,0;MQSB=0.590909;MQ0F=0 PL 0,3,42 0,6,73 0,6,75 0,9,120 0,15,151
17 133 . T <*> 0 . DP=13;I16=11,2,0,0,512,20224,0,0,718,41282,0,0,248,5490,0,0;QS=5,0;MQSB=0.590909;MQ0F=0 PL 0,3,38 0,6,74 0,6,71 0,9,105 0,15,150
17 134 . C <*> 0 . DP=13;I16=11,2,0,0,526,21368,0,0,718,41282,0,0,248,5542,0,0;QS=5,0;MQSB=0.590909;MQ0F=0 PL 0,3,41 0,6,79 0,6,77 0,9,105 0,15,152
17 135 . T <*> 0 . DP=13;I16=11,2,0,0,523,21213,0,0,718,41282,0,0,248,5606,0,0;QS=5,0;MQSB=0.590909;MQ0F=0 PL 0,3,40 0,6,78 0,6,77 0,9,106 0,15,156
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