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Changed sanity-check comparison to be case-insensity #157

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Changed sanity-check comparison to be case-insensity #157

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2 changes: 1 addition & 1 deletion vcfmerge.c
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Original file line number Diff line number Diff line change
Expand Up @@ -526,7 +526,7 @@ char **merge_alleles(char **a, int na, int *map, char **b, int *nb, int *mb)
}

// Sanity check: reference prefixes must be identical
if ( strncmp(a[0],b[0],rla<rlb?rla:rlb) )
if ( strncasecmp(a[0],b[0],rla<rlb?rla:rlb) )
{
fprintf(stderr, "The REF prefixes differ: %s vs %s (%d,%d)\n", a[0],b[0],rla,rlb);
return NULL;
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