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Added ULTIMA and ELEMENT as valid value for RG-PL according to SAM sp…
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…ec. (#1619)
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rickymagner authored Sep 20, 2022
1 parent 489c419 commit d15a5ba
Showing 1 changed file with 19 additions and 1 deletion.
20 changes: 19 additions & 1 deletion src/main/java/htsjdk/samtools/SAMReadGroupRecord.java
Original file line number Diff line number Diff line change
Expand Up @@ -61,13 +61,26 @@ public class SAMReadGroupRecord extends AbstractSAMHeaderRecord
public enum PlatformValue {
/** @deprecated Use {@linkplain PlatformValue#DNBSEQ} instead. */
@Deprecated BGI,

/** Capillary */
CAPILLARY,

/** MGI/BGI */
DNBSEQ,

/** Element Biosciences */
ELEMENT,

/** Helicos Biosciences */
HELICOS,

/** Illumina */
ILLUMINA,

/** Iontorrent */
IONTORRENT,

/** 454 Life Sciences */
LS454,

/** Oxford Nanopore */
Expand All @@ -78,7 +91,12 @@ public enum PlatformValue {

/** Pacific Biotechnology */
PACBIO,
SOLID

/** Life Technologies */
SOLID,

/** Ultima Genomics */
ULTIMA
}

public static final Set<String> STANDARD_TAGS =
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