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Remove SAMTools.java after one/two releases #955

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magicDGS opened this issue Jul 28, 2017 · 0 comments
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Remove SAMTools.java after one/two releases #955

magicDGS opened this issue Jul 28, 2017 · 0 comments

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@magicDGS
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After #937, the SAMTools class was deprecated. This will be included in the following release, and the class should be removed after one/two releases to allow dependent code to be changed (if any).

Current release is 2.10.1
@magicDGS magicDGS changed the title Remove SAMTools.jar after one/two releases Remove SAMTools.java after one/two releases Oct 28, 2018
@magicDGS magicDGS mentioned this issue Oct 28, 2018
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lbergelson pushed a commit that referenced this issue Nov 5, 2018
@magicDGS @lbergelson
Delete long-term deprecated code (#1213)
1e6454b 
* Deleting deprecated classes SAMTools and FixBAMFile without replacement.
  These classes are command line tools that do not belong in htsjdk.  
* Closes #955
* Closes #972
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