Add "endpos" filter expression #1307
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I think the ongoing discussion around endpos vs posend is a good one too. I'm ambivalent really. Anyway it's not something we should spend time on for this release, but I'm fully up for adding this feature. A bit of a no-brainer really. Thanks. |
"endpos" is the (1-based inclusive) position of the rightmost mapped base of the read, as measured using the CIGAR string. (bam_endpos() returns 0-based exclusive, which is the same thing.) For unmapped reads, it is the same as "pos".
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For your amusement at this time, here is a PR that implements
endposas a filter expression, in response to https://twitter.com/gringene_bio/status/1412686733225857024.See also the companion documentation PR samtools/samtools#1464.
"endpos" is the (1-based inclusive) position of the rightmost mapped base of the read, as measured using the CIGAR string. (
bam_endpos()returns 0-based exclusive, which is the same thing.) For unmapped reads, it is the same as "pos".