Code

Base mod API improvements#1636

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whitwham merged 6 commits intosamtools:developsamtools/htslib:developfrom jkbonfield:base_mod_revampjkbonfield/htslib:base_mod_revampCopy head branch name to clipboardJul 10, 2023

+889-533

Commits

Commits on Jul 7, 2023

• Migrate base modification code out of sam.c

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• Correct base modification implicit / explicit status when mixed together.

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• Add a bam_mods_queryi interface.

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• Add bam_parse_basemod2 API with additional flags argument.

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• Add more internal sam_mods.c documentation

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• Update bam_next_basemod too to cope with HTS_MOD_REPORT_UNCHECKED.

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