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added thread pool to tabix operations #1755

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Mar 7, 2024
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added thread pool to tabix operations #1755

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8 changes: 7 additions & 1 deletion tabix.1
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Expand Up @@ -4,7 +4,7 @@
tabix \- Generic indexer for TAB-delimited genome position files
.\"
.\" Copyright (C) 2009-2011 Broad Institute.
.\" Copyright (C) 2014, 2016, 2018, 2020, 2022 Genome Research Ltd.
.\" Copyright (C) 2014, 2016, 2018, 2020, 2022, 2024 Genome Research Ltd.
.\"
.\" Author: Heng Li <lh3@sanger.ac.uk>
.\"
Expand Down Expand Up @@ -78,6 +78,8 @@ and BAI index formats can handle individual chromosomes up to 512 Mbp
If your input file might contain data lines with begin or end positions
greater than that, you will need to use a CSI index.

Multiple threads can be used for operations except listing of sequence names.

.SH INDEXING OPTIONS
.TP 10
.B -0, --zero-based
Expand Down Expand Up @@ -167,6 +169,10 @@ The default is 3, which turns on error and warning messages;
2 reduces warning messages;
1 prints only error messages and 0 is mostly silent.
Values higher than 3 produce additional informational and debugging messages.
.TP
.BI "-@, --threads " INT
Set number of threads to use for the operation.
The default is 0, where no extra threads are in use.
.PP
.SH EXAMPLE
(grep "^#" in.gff; grep -v "^#" in.gff | sort -t"`printf '\(rst'`" -k1,1 -k4,4n) | bgzip > sorted.gff.gz;
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