Update the path to the test repo

sanctuuary · Sep 25, 2024 · 4359a3f · 4359a3f
1 parent 54e6c2e
commit 4359a3f
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/.github/workflows/mvnbuild.yml b/.github/workflows/mvnbuild.yml
@@ -35,8 +35,8 @@ jobs:
         pip3 install cwlref-runner
     - name: Test CWL generation
       run: |
-        git clone https://github.com/Workflomics/domain-annotations
-        cd domain-annotations/WombatP_tools
+        git clone https://github.com/Workflomics/containers
+        cd containers/domains/proteomics
         java -jar ../../target/APE-*-executable.jar ./config.json
         cd ./CWL
         cwltool --enable-dev --validate candidate_workflow_1.cwl

diff --git a/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java b/src/main/java/nl/uu/cs/ape/domain/APEDomainSetup.java
@@ -9,7 +9,6 @@
 import org.json.JSONException;
 import org.json.JSONObject;
 
-import lombok.Getter;
 import lombok.Setter;
 import lombok.extern.slf4j.Slf4j;
 import nl.uu.cs.ape.configuration.APECoreConfig;
@@ -576,7 +575,7 @@ public void localCNF(File satInputFile, SATAtomMappings mappings) throws IOExcep
             String encoding = APEUtils.convertCNF2humanReadable(cnfStream, mappings);
             cnfStream.close();
 
-                APEFiles.write2file(encoding, new File(writeLocalCNF), false);
+            APEFiles.write2file(encoding, new File(writeLocalCNF), false);
         }
     }