Initial CI setup #55
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Initial CI setup #55
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Set up a basic continuous integration workflow with: - Python 3.6-3.8 on Ubuntu - Dependency installation - Flake8 testing - Unit testing
Update the setuptools package in addition to the pip and wheel packages.
Increase the versions to match the custom binaries built for Python 3.6-3.9 compatibility (3.9 supported in MagellanMapper GUI once VTK supports 3.9 as well).
Increase to 9.0.1 to support Python 3.8.
Install libsm6 and libgl1-mesa-glx libraries in Ubuntu-based CI workflow.
Set environment variable for offscreen display.
Commit 53acd7a introduced a regression where the distance calculation was removed for finding local peaks, fixed here. Also, set the default output value.
- Check to ensure that the label is a valid image shape before attempting to load - Simplify a chained comparison
The stitch folder is used for ImageJ as Jython rather than Python file including scripting parameters which lead to errors in Flake8, now ignored.
- Turn off `unit_testing` test for now since it requires an artifact - Add unit testing for `libmag` module
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This PR sets up a basic continuous integration workflow with:
The workflow is based on the GitHub guide (https://docs.github.com/en/actions/guides/building-and-testing-python) and the default workflow template in the Actions tab.