Merge pull request #16 from martinghunt/minimus2_error_typos

Minimus2 error typos
sanger-pathogens · May 29, 2015 · b3f87c7 · b3f87c7
2 parents 56ccbeb + 21d4099
commit b3f87c7
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/circlator/common.py b/circlator/common.py
@@ -1,7 +1,7 @@
 import sys
 import subprocess
 
-version = '0.13.0'
+version = '0.13.1'
 
 def syscall(cmd, allow_fail=False, verbose=False):
     if verbose:

diff --git a/circlator/minimus2.py b/circlator/minimus2.py
@@ -144,8 +144,8 @@ def _run_initial_merge(self, infile, outdir):
             print('Error running merge. Going to use original contigs. Minimus2 errors follow...\n', file=sys.stderr)
             print(errors, file=sys.stderr)
             print('... end of Minimus2 output.\n\n', file=sys.stderr)
-            logging.info('Number of original contigs: ' + strlen(original_contigs))
-            logging.info('Number of singleton contigs: ', 'NA')
+            logging.info('Number of original contigs: ' + str(len(original_contigs)))
+            logging.info('Number of singleton contigs: NA')
             logging.info('Number of contigs that were merged: NA')
             logging.info('Merged contigs: NA')
             return infile

diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
     name='circlator',
-    version='0.13.0',
+    version='0.13.1',
     description='circlator: a tool to circularise bacterial genome assemblies',
     packages = find_packages(),
     package_data={'circlator': ['data/*']},