Fix typo in warning message

iva/kcount.py

@@ -94,7 +94,7 @@ def _run_kmc(reads, outprefix, kmer, min_count, max_count, verbose=0):
  # RAM available on the machine.
  ran_ok = _run_kmc_with_script('run_kmc.sh', reads, kmer_counts_file, kmer, min_count, max_count, 32, verbose, True)
  if not ran_ok:
- if self.verbose:
+ if verbose:
  print('First try of running kmc failed. Trying again with -m4 instead of -m32...', flush=True)
  ran_ok = _run_kmc_with_script('run_kmc.sh', reads, kmer_counts_file, kmer, min_count, max_count, 4, verbose, False)
 
@@ -152,7 +152,7 @@ def _kmc_to_kmer_counts(infile, number, kmers_to_ignore=None, contigs_to_check=N
  counts[sam.seq.decode()] = count
  sam_reader.close()
 
- shutil.rmtree(tmpdir) 
+ shutil.rmtree(tmpdir)
  return counts
 
 
@@ -168,7 +168,7 @@ def _write_ref_seqs_to_be_checked(outfile, kmers_to_ignore=None, contigs_to_chec
  print('>', i, sep='', file=f)
  print(kmer, file=f)
  i += 1
- 
+
  if contigs_to_check is not None and len(contigs_to_check) > 0:
  original_line_length = fastaq.sequences.Fasta.line_length
  fastaq.sequences.Fasta.line_length = 0
@@ -191,11 +191,11 @@ def _counts_file_to_fasta(infile, outfile):
  count = int(count)
  except:
  raise Error('Error getting kmer info from this line:\n' + line)
- 
+
  print('>', i, '_', count, sep='', file=fout)
  print(kmer, file=fout)
  i += 1
- 
+
  fastaq.utils.close(fin)
  fastaq.utils.close(fout)