Merge pull request #71 from andrewjpage/scratch118

update 108 to 118
sanger-pathogens · Jan 23, 2017 · 2410251 · 2410251
2 parents 92a2253 + 6e87c0a
commit 2410251
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/bin/download_fasta_database b/bin/download_fasta_database
@@ -65,7 +65,7 @@ USAGE
 ;
 
 $base_directory ||= $ENV{MLST_DATABASES};
-$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst';
+$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst';
 $url  ||= 'ftp://ftp.cdc.gov/pub/infectious_diseases/biotech/tsemm/tofasta.tfa';
 $species     ||= 'Streptococcus pyogenes emm';
 $gene_name   ||= 'emm';

diff --git a/bin/download_mlst_databases b/bin/download_mlst_databases
@@ -49,7 +49,7 @@ USAGE
 ;
 
 $base_directory ||= $ENV{MLST_DATABASES};
-$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst';
+$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst';
 
 $config_file    ||= 'http://pubmlst.org/data/dbases.xml';
 

diff --git a/bin/get_emm_sequence_type b/bin/get_emm_sequence_type
@@ -80,7 +80,7 @@ USAGE
 ;
 
 $base_directory ||= $ENV{MLST_DATABASES};
-$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst';
+$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst';
 
 # Multiple versions of blast lying around, so use a particular one if possible
 # Warns if the user's preferred executable cannot be found; errors if defaults are also missing

diff --git a/bin/get_sequence_type b/bin/get_sequence_type
@@ -75,7 +75,7 @@ USAGE
 ;
 
 $base_directory ||= $ENV{MLST_DATABASES};
-$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst';
+$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst';
 
 # Multiple versions of blast lying around, so use a particular one if possible
 # Warns if the user's preferred executable cannot be found; errors if defaults are also missing