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Issues list

snp-sites -C with gubbins outputs
#114 opened Sep 10, 2024 by djbradshaw2
2
why snp-sites generated variations numbers different snippy mapping results
#113 opened Jun 6, 2024 by Zjianglin
Warning: No SNPs were detected so there is nothing to output
#112 opened Sep 30, 2023 by sreerampeela
1
How to know the interested SNP position in genome?
#111 opened Apr 20, 2023 by snackens
segmentation fault
#110 opened Mar 15, 2023 by BettyAC
2
How to specify the reference sequence
#109 opened Oct 11, 2022 by ACColin
./configure: line 3036: syntax error near unexpected token CHECK,check' ./configure: line 3036: PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",'
#108 opened Apr 20, 2022 by nick-pestell
How to understand monomorphic sites?
#107 opened Dec 6, 2021 by xuechunxu
1
Recommendation for multiple genome alignment
#106 opened Nov 24, 2021 by snayfach
1
What does *STAR* in ALT stand for
#105 opened Aug 4, 2021 by jielab
3
snp-sites for all ~2 million SARS-COV-2 genomes in GISAID
#104 opened Aug 2, 2021 by jielab
1
Improvement: let user specify pure and ambiguous bases
#103 opened Mar 30, 2021 by arturotorreso
snp-sites docker install issue
#102 opened Mar 29, 2021 by AgatheJouet
error: alignment contains sequences of unequal length
#101 opened Feb 21, 2021 by rderelle
8
Is there a way to extract SNP mutations form the VCF file ?
#99 opened Dec 7, 2020 by ASQWZXED
How to manage heterozygosity in SNP conversion?
#98 opened Sep 29, 2020 by Pryfed
snp-sites -c doesn't produce recognisable alignment for IQtree
#97 opened Sep 14, 2020 by martinastoycheva
1
Warning: No SNPs were detected so there is nothing to output
#96 opened Aug 28, 2020 by pgcudahy
1
32 bit signed integer error
#95 opened Aug 12, 2020 by ethering
1
snp-sites do not see do deletion events
#94 opened Jul 28, 2020 by bioinfornatics
1
snps-sites tool help
#93 opened Jul 19, 2020 by cmaquez
how to visualize VCF file in artemis?
#91 opened Jun 6, 2020 by tushar-ahmed
Possibility to specify known reference
#90 opened Apr 30, 2020 by jcgrenier
2
specify order of output of -C option in help message
#88 opened Jan 3, 2020 by amilesj
2
functionality of -b option alone?
#82 opened Aug 1, 2019 by eam12
1
ProTip! Exclude everything labeled bug with -label:bug.