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Release V1.0.0 Merge#25

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DLBPointon wants to merge 77 commits intomainsanger-tol/curationpretext:mainfrom devsanger-tol/curationpretext:devCopy head branch name to clipboard

+3,522-562

Commits

Commits on Oct 27, 2023

• Update generate_cram_csv.nf

  scorreard

  authored
  2989f16

Commits on Oct 30, 2023

• Merge pull request #15 from scorreard/dev

  Show description for 9514488
  DLBPointon

  authored
  9514488

Commits on Feb 6, 2024

• Updating everything

  DLBPointon

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  cadd40c

• Updating testing

  DLBPointon

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  389caeb

• Forgotten module

  DLBPointon

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  bad5076

• Channel assignment

  DLBPointon

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  73cbd14

• Messed up workflow

  DLBPointon

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  27e1a3f

• Messed up workflow

  DLBPointon

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  98d36ef

• Messed up workflow

  DLBPointon

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  644b0b1

• Messed up workflow

  DLBPointon

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  c59909c

Commits on Feb 7, 2024

• Getting closer to parity with TreeVal

  DLBPointon

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  d2144be

• Resource corrections

  DLBPointon

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  c254312

• Resource corrections

  DLBPointon

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  8b7e2be

• Missing files and incorrect arg

  DLBPointon

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  8994796

• Linting and removed docker.useremulation

  DLBPointon

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  a3c792e

• Ci fix

  DLBPointon

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  e089acd

• Ci fix

  DLBPointon

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  9ea01a4

• Ci fix

  DLBPointon

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  fd4f5bd

Commits on Feb 8, 2024

• Updating all modules

  DLBPointon

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  4da9378

• Linting

  DLBPointon

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  9b09fa7

• Variable misspell

  DLBPointon

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  8f17dbf

• Updating the pretext modules to use local pretext software

  DLBPointon

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  0360796

• Merge pull request #18 from sanger-tol/dp24_modules_update

  Show description for 9e0eca6
  DLBPointon

  authored
  9e0eca6

Commits on Feb 9, 2024

• updating documents also caught bug that was stopping params file from being used

  DLBPointon

  committed
  1c23e8b

• Merge branch 'dp24_treeval_parity' into dp24_docs_update

  DLBPointon

  authored
  7ecef09

• caught a rogue pacbio!

  DLBPointon

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  2045e35

• prettier

  DLBPointon

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  b5814ae

• subworkflow updates

  DLBPointon

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  226b4dd

• subworkflow updates

  DLBPointon

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  5c4c467

• subworkflow updates

  DLBPointon

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  7212f0d

• Removing pretext hires snapshot

  DLBPointon

  committed
  0342959

Commits on Feb 12, 2024

• Merge pull request #19 from sanger-tol/dp24_docs_update

  Show description for a86834c
  DLBPointon

  authored
  a86834c

Commits on Feb 13, 2024

• updated docs

  DLBPointon

  committed
  8359993

• prettier

  DLBPointon

  committed
  885bb87

Commits on Feb 16, 2024

• Merge branch 'dp24_treeval_parity' into dp24_docs_update

  DLBPointon

  authored
  4494480

• Merge pull request #20 from sanger-tol/dp24_docs_update

  Show description for 563bef6
  DLBPointon

  authored
  563bef6

Commits on Feb 22, 2024

• Update CHANGELOG.md

  DLBPointon

  authored
  f9b8f22

Commits on Mar 6, 2024

• Parity

  Show description for 60ac7f0
  DLBPointon

  committed
  60ac7f0

• Parity

  Show description for 894cb9b
  DLBPointon

  committed
  894cb9b

• Parity

  Show description for 1b96ce7
  DLBPointon

  committed
  1b96ce7

• Parity

  Show description for 627fe56
  DLBPointon

  committed
  627fe56

• Parity

  Show description for 3719d36
  DLBPointon

  committed
  3719d36

• Parity

  Show description for 728ed9b
  DLBPointon

  committed
  728ed9b

Commits on Apr 12, 2024

• updating test file

  DLBPointon

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  9d7ae0b

• Updating the test case

  DLBPointon

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  d3c7d6e

• Updating documentation

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  da6c17d

• Updating documentation

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  3efbbda

• clarification of channels and logic

  DLBPointon

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  ddfd30a

• Updating the version information

  DLBPointon

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  7c1ba40

• minor update to ci

  DLBPointon

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  c044be9

• Update to modules to output the proper files

  DLBPointon

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  f8fb698

• Updating the input channel setup, niche case caused an error highlighting this

  DLBPointon

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  4456f4d

• Fix for testing

  DLBPointon

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  1aa4857

• Updating the input channel setup, niche case caused an error highlighting this

  DLBPointon

  committed
  5dc3fed

Commits on May 24, 2024

• Fixed error where I had created a malformed channel inside a channel

  DLBPointon

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  145db15

• Update for linting

  DLBPointon

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  ad1f4d6

• Erroneous '''

  DLBPointon

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  c69ea4c

• Erroneous '''

  DLBPointon

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  43f7b1e

• Update to Lisence for Arima Script

  DLBPointon

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  b00bb0f

• Updating test data and temp dir in modules

  DLBPointon

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  d65efb8

• Fixed the RIGHT files for the test data

  DLBPointon

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  35e87e8

• Fixed the pattern for input

  DLBPointon

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  ac9e5f4

• Comment out two lines which check file location, doesn't work for s3 files

  DLBPointon

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  a3fe905

• Comment out two lines which check file location, doesn't work for s3 files

  DLBPointon

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  d36ecb5

• Reverting change to tests and param checks

  DLBPointon

  committed
  ff56482

Commits on May 28, 2024

• Update minimap2 align algorithm

  DLBPointon

  committed
  c521a87

Commits on Jul 4, 2024

• Logo for the pipeline

  DLBPointon

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  f44a52b

• Adding the new logo for the pipeline, only in light version

  DLBPointon

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  9b11919

• 2nd Parity update to 1.1.1 treeval

  DLBPointon

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  5e22cd9

• Update to linting

  DLBPointon

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  2e26ea7

• linting

  DLBPointon

  committed
  2f0fd0d

Commits on Jul 5, 2024

• Update to download containers before running pipeline

  DLBPointon

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  419ca9b

• Update to download containers before running pipeline

  DLBPointon

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  a07757e

• Update version in command

  DLBPointon

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  01c23d1

• DARK MODE!

  DLBPointon

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  fbea6a4

• Update for Dark mode

  DLBPointon

  committed
  9d9f779

Commits on Jul 8, 2024

• Merge pull request #17 from sanger-tol/dp24_treeval_parity

  Show description for c0650ec
  DLBPointon

  authored
  c0650ec