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Let's use small y for yes. Big N is the default answer.
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gq1 authored and muffato committed Apr 9, 2024
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Expand Up @@ -14,7 +14,7 @@ This is done by using the `nf-core create` command - see [the docs](https://nf-c
This tool does lots of things for you: it gives you the correct file structure and boiler plate code
and also sets up the required `git` infrastructure for you to keep your pipeline in sync in the future.

When asked _Do you want to customize which parts of the template are used ?_, answer `Y`.
When asked _Do you want to customize which parts of the template are used ?_, answer `y`.
Then, set the "Pipeline prefix" to "sanger-tol", and when asked to "Skip template areas",
disable "iGenomes config" by:

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