Set use_work_dir_as_temp to true when running at the Sanger

sanger-tol · Jan 5, 2024 · 5e76463 · 5e76463
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commit 5e76463
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diff --git a/.github/workflows/sanger_test.yml b/.github/workflows/sanger_test.yml
@@ -18,6 +18,7 @@ jobs:
           parameters: |
             {
               "outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ github.sha }}",
+              "use_work_dir_as_temp": true,
             }
           profiles: test,sanger,singularity,cleanup
 

diff --git a/conf/test_full.config b/conf/test_full.config
@@ -19,4 +19,7 @@ params {
 
     // Fasta references
     fasta = "/lustre/scratch124/tol/projects/darwin/data/insects/Polyommatus_icarus/assembly/release/ilPolIcar1.1/insdc/GCA_937595015.1.fasta.gz"
+
+    // Need to be set to avoid overfilling /tmp
+    use_work_dir_as_temp = true
 }