Merge pull request #400 from sanger/DPL-050-newcastle-lab

DPL-050 Automated processing on Beckmans: New LH lab Newcastle [Heron]
sanger · Jul 26, 2021 · f64bd71 · f64bd71
2 parents b465b26 + 184c083
commit f64bd71
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Showing 3 changed files with 16 additions and 2 deletions.
diff --git a/.release-version b/.release-version
@@ -1 +1 @@
-1.25.0
+1.26.0
diff --git a/crawler/config/centres.py b/crawler/config/centres.py
@@ -173,6 +173,20 @@
         "file_names_to_ignore": [],
         "biomek_labware_class": BIOMEK_LABWARE_CLASS_KINGFISHER,
     },
+    {
+        "barcode_field": FIELD_RNA_ID,
+        "barcode_regex": CENTRE_REGEX_BARCODE,
+        "name": "Newcastle",
+        "prefix": "NEWC",
+        "lab_id_default": "NCL",
+        "backups_folder": f"{CENTRE_DIR_BACKUPS}/NEWC",
+        "sftp_file_regex_unconsolidated_surveillance": r"^$",
+        "sftp_file_regex_consolidated_surveillance": r"^ICHNE\d+[A-Z|a-z]{1}\.csv$",
+        "sftp_file_regex_consolidated_eagle": r"^$",
+        "sftp_root_read": "project-heron_newc",
+        "file_names_to_ignore": [],
+        "biomek_labware_class": BIOMEK_LABWARE_CLASS_KINGFISHER,
+    },
     {
         "barcode_field": FIELD_RNA_ID,
         "barcode_regex": CENTRE_REGEX_BARCODE,

diff --git a/tests/test_main.py b/tests/test_main.py
@@ -7,7 +7,7 @@
 from crawler.db.mongo import get_mongo_collection
 from crawler.main import run
 
-NUMBER_CENTRES = 11
+NUMBER_CENTRES = 12
 NUMBER_VALID_SAMPLES = 7
 NUMBER_SAMPLES_ON_PARTIAL_IMPORT = 10
 NUMBER_OF_FILES_PROCESSED = 12