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  1. Circle_finder Circle_finder Public

    Forked from pk7zuva/Circle_finder

    Micro DNA identification

    Shell 1

  2. AmpliconArchitect AmpliconArchitect Public

    Forked from virajbdeshpande/AmpliconArchitect

    AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …

    Python

  3. AmpliconClassifier AmpliconClassifier Public

    Forked from AmpliconSuite/AmpliconClassifier

    Classify output of AmpliconArchitect to detect types of focal amplifications present

    Python

  4. AmpliconReconstructor AmpliconReconstructor Public

    Forked from AmpliconSuite/AmpliconReconstructorOM

    Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

    Python

  5. PrepareAA PrepareAA Public

    Forked from AmpliconSuite/AmpliconSuite-pipeline

    A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.

    Python

  6. STAR_protocols_GV_calling STAR_protocols_GV_calling Public

    Forked from ds21uab/STAR_protocols_GV_calling

    For questions about the scripts in this project please contact Divya Sahu (dsahu@uab.edu or sahu.divya786@gmail.com)

    R