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schnamo committed Mar 3, 2024
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# CIAlign
CIAlign documentation is now available via [ReadTheDocs](https://cialign.readthedocs.io/en/latest/)

## Installation

**Requirements**

* python >= 3.6
* matplotlib >= 2.1.1
* numpy >= 1.16.3
* scipy >= 1.3.0

The easiest way to install CIAlign is using conda or pip3.

**Conda**

`conda install -c bioconda cialign`

[link](https://anaconda.org/bioconda/cialign)

**pip3**
`pip3 install cialign`

[link](https://pypi.org/project/cialign/)

**Download**
The current release of CIAlign can also be downloaded directly using [this link](https://github.com/KatyBrown/CIAlign/releases/latest),

If you download the package directly, you will also need to add the CIAlign directory to your PATH environment variable as described [here](https://gist.github.com/nex3/c395b2f8fd4b02068be37c961301caa7)

## Summary
CIAlign allows the user to:


**Clean**

* Remove sources of noise from an MSA
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