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[BUG FIX] - osp_saveNII fails if water signal does not originate from… #739

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merged 1 commit into from
May 19, 2024
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[BUG FIX] - osp_saveNII fails if water signal does not originate from… #739

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11 changes: 9 additions & 2 deletions process/osp_saveJMRUI.m
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Original file line number Diff line number Diff line change
Expand Up @@ -110,9 +110,16 @@

% Now do the same for the (short-TE) water signal
if MRSCont.flags.hasWater
% Get TE and the input file name. For GE, the water and ecc reference is
% already contained in the P file.
% Get TE and the input file name
te_w = MRSCont.processed.w{kk}.te;
[path_w,filename_w,~] = fileparts(MRSCont.files_w{kk});
if strcmpi(MRSCont.vendor, 'GE')
te_w = MRSCont.processed.A{kk}.te;
[path_w,filename_w,~] = fileparts(MRSCont.files{kk});
else
te_w = MRSCont.processed.w{kk}.te;
[path_w,filename_w,~] = fileparts(MRSCont.files_w{kk});
end
% For batch analysis, get the last two sub-folders (e.g. site and
% subject)
path_w_split = regexp(path_w,filesep,'split');
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9 changes: 7 additions & 2 deletions process/osp_saveNII.m
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Original file line number Diff line number Diff line change
Expand Up @@ -128,8 +128,13 @@

% Now do the same for the (short-TE) water signal
if MRSCont.flags.hasWater
% Get TE and the input file name
[path_w,filename_w,ext_w] = fileparts(MRSCont.files_w{kk});
% Get the input file name. For GE, the water and ecc reference is
% already contained in the P file.
if strcmpi(MRSCont.vendor, 'GE')
[path_w,filename_w,ext_w] = fileparts(MRSCont.files{kk});
else
[path_w,filename_w,ext_w] = fileparts(MRSCont.files_w{kk});
end
% For batch analysis, get the last two sub-folders (e.g. site and
% subject)
if strcmp(ext_w, '.gz')
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