Merge pull request #43 from rcnijzink/update_docs

Update docs

VOM_Fortran/VOM-docu/html_docu/HowToRun.html

@@ -307,15 +307,22 @@ <h4>Description</h4>
     <br>
     "sce_progress.txt" gets progressively filled with messages as the model
     runs. To find out whether the model is still running, check if the
-    "sce-progress.txt" is growing or use the "ps" command. If the model run has
-    stopped and the "sce_status.txt" has not been written, the model has to be
+    "sce-progress.txt" is growing. The executable automatically restarts the SCE-algorithm,
+    but if the a runtime_limit is set (in minutes), it will stop when this is reached. 
+    If the model run has stopped and the "sce_status.txt" has not been written yet, the model has to be
     restarted again as described above. Every start of the executable adds
     another loop to the file "sce_progress.txt" and a new group of parameter
     sets and objective function values, until the optimal set has been found and
-    the file "sce_status.txt" is written to the disc. If the file
-    "sce_status.txt" appears, the model has to be run one more time to write the
-    results obtained with the optimised parameter set to the disc. This does not
-    take long. Also see below.<br>
+    the file "sce_status.txt" is written to the disc.  <br>
+
+<br>
+    If the file "sce_status.txt" appears, the model has to be run one more time to write the
+    results obtained with the optimised parameter set to the disc. The VOM_command has to be set to
+    2 in the vom_namelist, and the file pars.txt has to be added to the input directory. 
+    Pars.txt should contain the parameters of the best run of the SCE-algorithm, that can be found in sce_lastbest.txt.
+    Note that the last value in sce_lastbest.txt is the obtained NCP-value, and needs to be removed. 
+
+<br>
     <hr>