Update saca use case to use "stats.pnrom"

scijava · May 1, 2024 · 96713b3 · 96713b3
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commit 96713b3
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/docs/ops/doc/examples/.saca.rst.swp b/docs/ops/doc/examples/.saca.rst.swp
diff --git a/docs/ops/doc/examples/saca.rst b/docs/ops/doc/examples/saca.rst
@@ -48,8 +48,8 @@ SciJava Ops via Fiji's scripting engine with `script parameters`_:
         // create SACA Z-score heatmap
         zscore = ops.op("coloc.saca.heatmapZScore").input(channels[0], channels[1]).apply()
 
-        // create SACA p-value heatmap
-        pvalue = ops.op("coloc.saca.heatmapPValue").input(zscore).apply()
+        // compute pixel-wise p-value
+        pvalue = ops.op("stats.pnorm").input(zscore).apply()
 
         // create SACA significant pixel mask
         sig_mask = ops.op("create.img").input(channels[0], new BitType()).apply()
@@ -89,8 +89,8 @@ SciJava Ops via Fiji's scripting engine with `script parameters`_:
         # create SACA Z-score heatmap
         zscore = ops.op("coloc.saca.heatmapZScore").input(channels[0], channels[1]).apply()
 
-        # create SACA p-value heatmap
-        pvalue = ops.op("coloc.saca.heatmapPValue").input(zscore).apply()
+        # compute pixel-wise p-value
+        pvalue = ops.op("stats.pnorm").input(zscore).apply()
 
         # create SACA significant pixel mask
         sig_mask = ops.op("create.img").input(channels[0], BitType()).apply()