Migrate tables from imagej-common

src/main/java/org/scijava/table/BoolColumn.java

@@ -0,0 +1,89 @@
+/*
+ * #%L
+ * ImageJ software for multidimensional image processing and analysis.
+ * %%
+ * Copyright (C) 2009 - 2017 Board of Regents of the University of
+ * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
+ * Institute of Molecular Cell Biology and Genetics.
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+
+package org.scijava.table;
+
+import org.scijava.util.BoolArray;
+
+/**
+ * Efficient implementation of {@link Column} for {@code boolean} primitives.
+ *
+ * @author Alison Walter
+ */
+public class BoolColumn extends BoolArray implements
+	PrimitiveColumn<boolean[], Boolean>
+{
+
+	/** The column header. */
+	private String header;
+
+	public BoolColumn() {}
+
+	public BoolColumn(final String header) {
+		this.header = header;
+	}
+
+	// -- Column methods --
+
+	@Override
+	public String getHeader() {
+		return header;
+	}
+
+	@Override
+	public void setHeader(final String header) {
+		this.header = header;
+	}
+
+	@Override
+	public Class<Boolean> getType() {
+		return Boolean.class;
+	}
+
+	// -- PrimitiveColumn methods --
+
+	@Override
+	public void fill(final boolean[] values) {
+		setArray(values.clone());
+		setSize(values.length);
+	}
+
+	@Override
+	public void fill(final boolean[] values, final int offset) {
+		// Check if array has been initialized
+		if (getArray() == null) setArray(values.clone());
+		else {
+			System.arraycopy(values, 0, getArray(), offset, values.length);
+		}
+		setSize(values.length);
+	}
+
+}

src/main/java/org/scijava/table/BoolTable.java

@@ -0,0 +1,51 @@
+/*
+ * #%L
+ * ImageJ software for multidimensional image processing and analysis.
+ * %%
+ * Copyright (C) 2009 - 2017 Board of Regents of the University of
+ * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
+ * Institute of Molecular Cell Biology and Genetics.
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+
+package org.scijava.table;
+
+/**
+ * A table of {@code boolean} values.
+ *
+ * @author Alison Walter
+ */
+public interface BoolTable extends Table<BoolColumn, Boolean> {
+
+	/** Gets the value of the given table cell. */
+	default boolean getValue(final int col, final int row) {
+		return get(col).getValue(row);
+	}
+
+	/** Sets the value of the given table cell. */
+	default void setValue(final int col, final int row, final boolean value) {
+		get(col).setValue(row, value);
+	}
+
+}

src/main/java/org/scijava/table/ByteColumn.java

@@ -0,0 +1,89 @@
+/*
+ * #%L
+ * ImageJ software for multidimensional image processing and analysis.
+ * %%
+ * Copyright (C) 2009 - 2017 Board of Regents of the University of
+ * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
+ * Institute of Molecular Cell Biology and Genetics.
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+
+package org.scijava.table;
+
+import org.scijava.util.ByteArray;
+
+/**
+ * Efficient implementation of {@link Column} for {@code byte} primitives.
+ *
+ * @author Alison Walter
+ */
+public class ByteColumn extends ByteArray implements
+	PrimitiveColumn<byte[], Byte>
+{
+
+	/** The column header. */
+	private String header;
+
+	public ByteColumn() {}
+
+	public ByteColumn(final String header) {
+		this.header = header;
+	}
+
+	// -- Column methods --
+
+	@Override
+	public String getHeader() {
+		return header;
+	}
+
+	@Override
+	public void setHeader(final String header) {
+		this.header = header;
+	}
+
+	@Override
+	public Class<Byte> getType() {
+		return Byte.class;
+	}
+
+	// -- PrimitiveColumn methods --
+
+	@Override
+	public void fill(final byte[] values) {
+		setArray(values.clone());
+		setSize(values.length);
+	}
+
+	@Override
+	public void fill(final byte[] values, final int offset) {
+		// Check if array has been initialized
+		if (getArray() == null) setArray(values.clone());
+		else {
+			System.arraycopy(values, 0, getArray(), offset, values.length);
+		}
+		setSize(values.length);
+	}
+
+}

src/main/java/org/scijava/table/ByteTable.java

@@ -0,0 +1,51 @@
+/*
+ * #%L
+ * ImageJ software for multidimensional image processing and analysis.
+ * %%
+ * Copyright (C) 2009 - 2017 Board of Regents of the University of
+ * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
+ * Institute of Molecular Cell Biology and Genetics.
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+
+package org.scijava.table;
+
+/**
+ * A table of byte-precision integer values.
+ *
+ * @author Alison Walter
+ */
+public interface ByteTable extends Table<ByteColumn, Byte> {
+
+	/** Gets the value of the given table cell. */
+	default byte getValue(int col, int row) {
+		return get(col).getValue(row);
+	}
+
+	/** Sets the value of the given table cell. */
+	default void setValue(int col, int row, byte value) {
+		get(col).setValue(row, value);
+	}
+
+}

src/main/java/org/scijava/table/CharColumn.java

@@ -0,0 +1,89 @@
+/*
+ * #%L
+ * ImageJ software for multidimensional image processing and analysis.
+ * %%
+ * Copyright (C) 2009 - 2017 Board of Regents of the University of
+ * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
+ * Institute of Molecular Cell Biology and Genetics.
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+
+package org.scijava.table;
+
+import org.scijava.util.CharArray;
+
+/**
+ * Efficient implementation of {@link Column} for {@code char} primitives.
+ *
+ * @author Alison Walter
+ */
+public class CharColumn extends CharArray implements
+	PrimitiveColumn<char[], Character>
+{
+
+	/** The column header. */
+	private String header;
+
+	public CharColumn() {}
+
+	public CharColumn(final String header) {
+		this.header = header;
+	}
+
+	// -- Column methods --
+
+	@Override
+	public String getHeader() {
+		return header;
+	}
+
+	@Override
+	public void setHeader(final String header) {
+		this.header = header;
+	}
+
+	@Override
+	public Class<Character> getType() {
+		return Character.class;
+	}
+
+	// -- PrimitiveColumn methods --
+
+	@Override
+	public void fill(final char[] values) {
+		setArray(values.clone());
+		setSize(values.length);
+	}
+
+	@Override
+	public void fill(final char[] values, final int offset) {
+		// Check if array has been initialized
+		if (getArray() == null) setArray(values.clone());
+		else {
+			System.arraycopy(values, 0, getArray(), offset, values.length);
+		}
+		setSize(values.length);
+	}
+
+}