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Chore: use Hatch build backend #1888

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Chore: use Hatch build backend #1888

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4a7191f
WIP: initial commit
agoose77 Jun 13, 2022
22c455f
Fix: use packages
agoose77 Jun 13, 2022
d4d8a26
Chore: remove check-manifest (no longer needed)
agoose77 Jun 13, 2022
5d463b6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 13, 2022
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8 changes: 2 additions & 6 deletions .github/workflows/publish-package.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -35,16 +35,12 @@ jobs:
with:
python-version: '3.10'

- name: Install python-build, check-manifest, and twine
- name: Install python-build and twine
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install build check-manifest twine
python -m pip install build twine
python -m pip list

- name: Check MANIFEST
run: |
check-manifest

- name: Build a wheel and a sdist
run: |
python -m build --outdir dist/ .
Expand Down
12 changes: 0 additions & 12 deletions MANIFEST.in
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This file was deleted.

300 changes: 256 additions & 44 deletions pyproject.toml
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Original file line number Diff line number Diff line change
@@ -1,42 +1,252 @@
[build-system]
# Minimum requirements for the build system to execute.
requires = ["setuptools>=42.0.0", "setuptools_scm[toml]>=3.4"]
build-backend = "setuptools.build_meta"
requires = [
"hatchling>=1.3.1",
"hatch-vcs",
]
build-backend = "hatchling.build"

[project]
name = "pyhf"
description = "pure-Python HistFactory implementation with tensors and autodiff"
readme = "README.rst"
license = { file = "LICENSE" }
requires-python = ">=3.7"
keywords = [
"fitting",
"jax",
"numpy",
"physics",
"pytorch",
"scipy",
"tensorflow",
]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: 3.10",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Physics",
]
dependencies = [
"click>=7.0", # for console scripts
"importlib_resources>=1.3.0; python_version < \"3.9\"", # for resources in schema
"jsonpatch>=1.15",
"jsonschema>=3.0.0", # for utils
"pyyaml>=5.1", # for parsing CLI equal-delimited options
"scipy>=1.1.0", # requires numpy, which is required by pyhf and tensorflow
"tqdm>=4.56.0" # for readxml
]
dynamic = [
"version",
]
authors = [
{ name = "Lukas Heinrich", email = "lukas.heinrich@cern.ch" },
{ name = "Matthew Feickert", email = "matthew.feickert@cern.ch"},
{ name = "Giordon Stark", email = "gstark@cern.ch" }
]

[project.optional-dependencies]
backends = [
"iminuit>=2.4.0",
"jax>=0.2.10",
"jaxlib>=0.1.60,!=0.1.68",
"tensorflow-probability>=0.11.0",
"tensorflow>=2.6.5",
"torch>=1.10.0",
]
complete = [
"black>=22.1.0",
"click_completion",
"codemetapy>=0.3.4",
"flake8",
"graphviz",
"iminuit>=2.4.0",
"ipython",
"ipywidgets",
"jax>=0.2.10",
"jaxlib>=0.1.60,!=0.1.68",
"jupyter",
"matplotlib",
"nbdime",
"nbsphinx!=0.8.8",
"papermill~=2.3.4",
"pre-commit",
"pydocstyle",
"pytest-benchmark[histogram]",
"pytest-console-scripts",
"pytest-cov>=2.5.1",
"pytest-mock",
"pytest-mpl",
"pytest>=6.0",
"requests",
"requests-mock>=1.9.0",
"scikit-hep-testdata>=0.4.11",
"scrapbook~=0.5.0",
"sphinx-click",
"sphinx-copybutton>=0.3.2",
"sphinx-issues",
"sphinx-togglebutton>=0.3.0",
"sphinx>=4.0.0",
"sphinx_rtd_theme",
"sphinxcontrib-bibtex~=2.1",
"tbump>=6.7.0",
"tensorflow-probability>=0.11.0",
"tensorflow>=2.6.5",
"torch>=1.10.0",
"twine",
"uproot>=4.1.1",
]
contrib = [
"matplotlib",
"requests",
]
develop = [
"black>=22.1.0",
"click_completion",
"codemetapy>=0.3.4",
"flake8",
"graphviz",
"iminuit>=2.4.0",
"ipython",
"ipywidgets",
"jax>=0.2.10",
"jaxlib>=0.1.60,!=0.1.68",
"jupyter",
"matplotlib",
"nbdime",
"nbsphinx!=0.8.8",
"papermill~=2.3.4",
"pre-commit",
"pydocstyle",
"pytest-benchmark[histogram]",
"pytest-console-scripts",
"pytest-cov>=2.5.1",
"pytest-mock",
"pytest-mpl",
"pytest>=6.0",
"requests",
"requests-mock>=1.9.0",
"scikit-hep-testdata>=0.4.11",
"scrapbook~=0.5.0",
"sphinx-click",
"sphinx-copybutton>=0.3.2",
"sphinx-issues",
"sphinx-togglebutton>=0.3.0",
"sphinx>=4.0.0",
"sphinx_rtd_theme",
"sphinxcontrib-bibtex~=2.1",
"tbump>=6.7.0",
"tensorflow-probability>=0.11.0",
"tensorflow>=2.6.5",
"torch>=1.10.0",
"twine",
"uproot>=4.1.1",
]
docs = [
"ipywidgets",
"matplotlib",
"nbsphinx!=0.8.8",
"requests",
"sphinx-click",
"sphinx-copybutton>=0.3.2",
"sphinx-issues",
"sphinx-togglebutton>=0.3.0",
"sphinx>=4.0.0",
"sphinx_rtd_theme",
"sphinxcontrib-bibtex~=2.1",
"uproot>=4.1.1",
]
jax = [
"jax>=0.2.10",
"jaxlib>=0.1.60,!=0.1.68",
]
lint = [
"black>=22.1.0",
"flake8",
]
minuit = [
"iminuit>=2.4.0",
]
shellcomplete = [
"click_completion",
]
tensorflow = [
"tensorflow-probability>=0.11.0",
"tensorflow>=2.6.5",
]
test = [
"click_completion",
"graphviz",
"iminuit>=2.4.0",
"jax>=0.2.10",
"jaxlib>=0.1.60,!=0.1.68",
"jupyter",
"matplotlib",
"papermill~=2.3.4",
"pydocstyle",
"pytest-benchmark[histogram]",
"pytest-console-scripts",
"pytest-cov>=2.5.1",
"pytest-mock",
"pytest-mpl",
"pytest>=6.0",
"requests",
"requests-mock>=1.9.0",
"scikit-hep-testdata>=0.4.11",
"scrapbook~=0.5.0",
"tensorflow-probability>=0.11.0",
"tensorflow>=2.6.5",
"torch>=1.10.0",
"uproot>=4.1.1",
]
torch = [
"torch>=1.10.0",
]
xmlio = [
"uproot>=4.1.1",
]

[project.scripts]
pyhf = "pyhf.cli:cli"

[project.urls]
"Documentation" = "https://pyhf.readthedocs.io/"
"Homepage" = "https://github.com/scikit-hep/pyhf"
"Issue Tracker" = "https://github.com/scikit-hep/pyhf/issues"
"Release Notes" = "https://pyhf.readthedocs.io/en/stable/release-notes.html"
"Source Code" = "https://github.com/scikit-hep/pyhf"

# Give Hatch the ability to determine the project version
[tool.hatch.version]
source = "vcs"

# Generate _version.py at build time
[tool.hatch.build.hooks.vcs]
version-file = "src/pyhf/_version.py"

[tool.hatch.build]
packages = [
"src/pyhf"
]

[tool.setuptools_scm]
write_to = "src/pyhf/_version.py"
local_scheme = "no-local-version"

[tool.black]
line-length = 88
target-version = ['py37', 'py38']
target-version = [
"py37",
"py38",
]
skip-string-normalization = true
include = '\.pyi?$'
exclude = '''
/(
\.git
| .eggs
| build
)/
'''
include = "\\.pyi?$"
exclude = "/(\n \\.git\n | .eggs\n | build\n)/\n"

[tool.check-manifest]
ignore = [
'docs*',
'validation*',
'examples*',
'tests*',
'docker*',
'binder*',
'.*',
'pyproject.toml',
'pytest.ini',
'codecov.yml',
'codemeta.json',
'CODE_OF_CONDUCT.md',
'CONTRIBUTING.md',
'AUTHORS',
]

[tool.pytest.ini_options]
minversion = "6.0"
Expand Down Expand Up @@ -78,21 +288,23 @@ markers = [
]
filterwarnings = [
"error",
'ignore:the imp module is deprecated:DeprecationWarning', # tensorflow
'ignore:distutils Version classes are deprecated:DeprecationWarning', # tensorflow-probability
'ignore:the `interpolation=` argument to percentile was renamed to `method=`, which has additional options:DeprecationWarning', # Issue #1772
"ignore:The interpolation= argument to 'quantile' is deprecated. Use 'method=' instead:DeprecationWarning", # Issue #1772
'ignore: Exception ignored in:pytest.PytestUnraisableExceptionWarning', #FIXME: Exception ignored in: <_io.FileIO [closed]>
'ignore:invalid value encountered in (true_)?divide:RuntimeWarning', #FIXME
'ignore:invalid value encountered in add:RuntimeWarning', #FIXME
"ignore:In future, it will be an error for 'np.bool_' scalars to be interpreted as an index:DeprecationWarning", #FIXME: tests/test_tensor.py::test_pdf_eval[pytorch]
'ignore:Creating a tensor from a list of numpy.ndarrays is extremely slow. Please consider converting the list to a single numpy.ndarray with:UserWarning', #FIXME: tests/test_optim.py::test_minimize[no_grad-scipy-pytorch-no_stitch]
'ignore:divide by zero encountered in (true_)?divide:RuntimeWarning', #FIXME: pytest tests/test_tensor.py::test_pdf_calculations[numpy]
'ignore:[A-Z]+ is deprecated and will be removed in Pillow 10:DeprecationWarning', # keras
"ignore:the imp module is deprecated:DeprecationWarning",
"ignore:distutils Version classes are deprecated:DeprecationWarning",
"ignore:the `interpolation=` argument to percentile was renamed to `method=`, which has additional options:DeprecationWarning",
"ignore:The interpolation= argument to 'quantile' is deprecated. Use 'method=' instead:DeprecationWarning",
"ignore: Exception ignored in:pytest.PytestUnraisableExceptionWarning",
"ignore:invalid value encountered in (true_)?divide:RuntimeWarning",
"ignore:invalid value encountered in add:RuntimeWarning",
"ignore:In future, it will be an error for 'np.bool_' scalars to be interpreted as an index:DeprecationWarning",
"ignore:Creating a tensor from a list of numpy.ndarrays is extremely slow. Please consider converting the list to a single numpy.ndarray with:UserWarning",
"ignore:divide by zero encountered in (true_)?divide:RuntimeWarning",
"ignore:[A-Z]+ is deprecated and will be removed in Pillow 10:DeprecationWarning",
]

[tool.nbqa.mutate]
pyupgrade = 1

[tool.nbqa.addopts]
pyupgrade = ["--py37-plus"]
pyupgrade = [
"--py37-plus",
]
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