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rapids update

rapids update #174

Workflow file for this run

name: GPU-CI
on:
push:
branches: [main]
pull_request:
types:
- labeled
- opened
- synchronize
# Cancel the job if new commits are pushed
# https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
jobs:
check:
runs-on: ubuntu-latest
steps:
- uses: flying-sheep/check@v1
with:
success: ${{ github.event_name == 'push' || contains(github.event.pull_request.labels.*.name, 'run-gpu-ci') }}
test:
name: GPU Tests
needs: check
runs-on: "cirun-aws-gpu--${{ github.run_id }}"
defaults:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Nvidia SMI sanity check
run: nvidia-smi
- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: "1.3.1-0"
environment-file: ci/rsc_test_env.yml
init-shell: >-
bash
generate-run-shell: false
- name: Install rapids-singlecell
run: pip install .[test]
- name: Mamba list
run: micromamba list
- name: Run test
run: pytest