gene column was shuffled

scverse · Oct 20, 2023 · f6c911b · f6c911b
1 parent 53cd8ef
commit f6c911b
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/src/spatialdata_io/readers/merscope.py b/src/spatialdata_io/readers/merscope.py
@@ -211,9 +211,7 @@ def _get_points(transcript_path: Path) -> dd.DataFrame:
         coordinates={"x": MerscopeKeys.GLOBAL_X, "y": MerscopeKeys.GLOBAL_Y},
         transformations={"microns": Identity()},
     )
-    categories = transcripts["gene"].compute().astype("category")
-    gene_categorical = dd.from_pandas(categories, npartitions=transcripts.npartitions).reset_index(drop=True)
-    transcripts["gene"] = gene_categorical
+    transcripts["gene"] = transcripts["gene"].astype("category")
     return transcripts