Visualiser for the effect of CNVs on Quantitative Traits

Usage

Interaction visaluations of phenotypic distributions for CNV carriers in UK Biobank using Bokeh. Hosted by Cardiff University and available here.

Code

The visualisation is designed to handle specified phenotypes in Biobank and CNV data. You could also run it locally as per below.

Required packages

• bokeh
• scipy
• pandas
• numpy
• statsmodels
• pyarrow

Or simply:

• git clone https://github.com/seafloor/cnv_quant_vis.git
• cd cnv_quant_vis
• conda env create -f environment.yml

Data must be in cnv_quant_vis/data/biobank2.parquet