Skip to content

Floating point exception in mkindexp with small genome file #118

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Closed
f-heeger opened this issue Mar 12, 2018 · 2 comments
Closed

Floating point exception in mkindexp with small genome file #118

f-heeger opened this issue Mar 12, 2018 · 2 comments
Assignees
@h-2
Labels
bug
Milestone
1.9.5

Comments

@f-heeger
Copy link

When testing a different issue I created the attached fasta file on which mkindexp crashes with the following error:

Detecting database alphabet... dna5 detected.
Loading Subject Sequences and Ids... done.
Dumping Subj Ids... done.
Dumping untranslated subject lengths... done.
Translating Subj Sequences... done.
Dumping unreduced Subj Sequences... done.
Checking parameters of to-be-built index...done.
Generating Index 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
Progress: |....:....:....:....:....:....:....:....:..Floating point exception (core dumped)

My command was:
lambda2 mkindexp -d trial_lambda_genome.fasta
May lambda version was the pre-compiled linux binaries of version 1.9.4

trial_lambda_genome.fasta.txt
@f-heeger f-heeger changed the title Floating point exception inmkindexp with small genome file Floating point exception in mkindexp with small genome file Mar 12, 2018
@h-2 h-2 self-assigned this Apr 4, 2018
@h-2
Copy link
Member

h-2 commented Apr 4, 2018

confirmed

@h-2 h-2 added this to the 1.9.5 milestone Apr 4, 2018
@h-2 h-2 added the bug label Apr 4, 2018
h-2 added a commit that referenced this issue Apr 9, 2018
@h-2
[FIXES-#118] floating point exception in indexer
279e6ca
@h-2
Copy link
Member

h-2 commented Apr 9, 2018

should be fixed in current master

@h-2 h-2 closed this as completed Apr 9, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@h-2 h-2

Labels
bug
Projects
None yet
Milestone
1.9.5
Development

No branches or pull requests
2 participants
@h-2 @f-heeger