seqeralabs · drpatelh · Dec 6, 2023 · Nov 30, 2023 · Nov 30, 2023 · Nov 30, 2023
diff --git a/conf/container.config b/conf/container.config
diff --git a/modules/local/plot_run_gantt/main.nf b/modules/local/plot_run_gantt/main.nf
@@ -1,6 +1,7 @@
 process PLOT_RUN_GANTT {
     tag "$meta.id"
     conda 'click=8.0.1 pandas=1.1.5 plotly_express=0.4.1 typing=3.10.0.0'
+    container 'seqeralabs/nf-aggregate:click-8.0.1_pandas-1.1.5_plotly_express-0.4.1_typing-3.10.0.0--342dabfe6548a051'
 
     input:
     tuple val(meta), path(run_dump)

diff --git a/modules/local/plot_run_gantt/tests/nextflow.config b/modules/local/plot_run_gantt/tests/nextflow.config
diff --git a/modules/local/seqera_runs_dump/main.nf b/modules/local/seqera_runs_dump/main.nf
@@ -3,6 +3,7 @@ include { getRunMetadata } from './functions'
 process SEQERA_RUNS_DUMP {
     tag "$meta.id"
     conda 'tower-cli=0.9.0'
+    container 'seqeralabs/nf-aggregate:tower-cli-0.9.0--2cb0f2e9d85d026b'
 
     input:
     val meta

diff --git a/modules/local/seqera_runs_dump/tests/nextflow.config b/modules/local/seqera_runs_dump/tests/nextflow.config
diff --git a/nextflow.config b/nextflow.config
@@ -58,7 +58,7 @@ profiles {
     wave {
         wave.enabled = true
         wave.strategy = ['conda']
-        wave.build.repository = 'public.ecr.aws/seqera-labs/wave/containers'
+        wave.build.repository = 'quay.io/seqeralabs/nf-aggregate'
         wave.freeze = true   
     }
     test_full {
@@ -157,10 +157,10 @@ profiles {
 // Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Singularity are enabled
 // Set to your registry if you have a mirror of containers
-apptainer.registry   = 'public.ecr.aws/seqera-labs/wave/containers'
-docker.registry      = 'public.ecr.aws/seqera-labs/wave/containers'
-podman.registry      = 'public.ecr.aws/seqera-labs/wave/containers'
-singularity.registry = 'public.ecr.aws/seqera-labs/wave/containers'
+apptainer.registry   = 'quay.io'
+docker.registry      = 'quay.io'
+podman.registry      = 'quay.io'
+singularity.registry = 'quay.io'
 
 // Nextflow plugins
 plugins {
@@ -182,9 +182,6 @@ env {
 // Load Nextflow config for nf_aggregate workflow
 includeConfig 'workflows/nf_aggregate/nextflow.config'
 
-// Load container config for nf_aggregate workflow
-includeConfig 'conf/container.config'
-
 // Capture exit codes from upstream processes when piping
 process.shell = ['/bin/bash', '-euo', 'pipefail']
 

diff --git a/tests/nextflow.config b/tests/nextflow.config
diff --git a/tests/main.nf.test → workflows/nf_aggregate/tests/main.nf.test b/tests/main.nf.test → workflows/nf_aggregate/tests/main.nf.test
@@ -10,7 +10,7 @@ nextflow_pipeline {
 
         when {
             params {
-                outdir     = "results"
+                outdir = "results"
             }
         }
 

diff --git a/tests/tags.yml → workflows/nf_aggregate/tests/tags.yml b/tests/tags.yml → workflows/nf_aggregate/tests/tags.yml
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,7 +10,7 @@ nextflow_pipeline { @@
             when {
                 params {
-                    outdir     = "results"
+                    outdir = "results"
                 }
             }
@@ Expand Down @@