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Fix: Organise results folder structure by pipeline #213

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Fix: Organise results folder structure by pipeline

Fix: Organise results folder structure by pipeline #213

GitHub Actions / JUnit Test Report failed Jul 24, 2024 in 0s. View latest attempt.

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in Test Process PLOT_RUN_GANTT

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

Test Process PLOT_RUN_GANTT.Should run without failures 

Assertion failed: 

2 of 2 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.06.0-edge
Launching `/home/runner/work/nf-aggregate/nf-aggregate/.nf-test-4edb0cdffc25f64c8ac8ecaccf3fdbec.nf` [nauseous_dalembert] DSL2 - revision: 36408b2006
Downloading plugin nf-validation@1.1.3
Downloading plugin nf-tower@1.9.1
WARN: 
Could not get workflow details for workflow 4Bi5xBK6E2Nbhj in workspace community/showcase:
    ↳ Status code 401 returned from request to https://api.tower.nf/orgs (authentication headers excluded)

ERROR ~ Exception: 401 Unauthorized

 -- Check script '/home/runner/work/nf-aggregate/nf-aggregate/modules/local/plot_run_gantt/tests/../../seqera_runs_dump/./functions.nf' at line: 14 or see '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/4edb0cdffc25f64c8ac8ecaccf3fdbec/meta/nextflow.log' file for more details
[43/d63dae] Submitted process > SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)
ERROR ~ Error executing process > 'SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)'

Caused by:
  Process `SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)` terminated with an error exit status (1)


Command executed:

  tw \
       \
       \
       \
      --url=https://api.tower.nf \
      --access-token=eyJ0aWQiOiA0NTUwfS5jYjk4ZmRiMTg5Y2U3MGI2NWIzNDViOTQ3NjU3MmExMjc4ODAxNDZl \
      runs \
      dump \
      -id=4Bi5xBK6E2Nbhj \
      --workspace=community/showcase \
      --output="4Bi5xBK6E2Nbhj.tar.gz" \
       \
      --add-task-logs
  
  mkdir -p 4Bi5xBK6E2Nbhj
  tar \
      -xvf \
      4Bi5xBK6E2Nbhj.tar.gz \
      -C 4Bi5xBK6E2Nbhj
  
  cat <<-END_VERSIONS > versions.yml
  "SEQERA_RUNS_DUMP":
      seqera-cli: $(echo $(NO_COLOR=true tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/seqeralabs/nf-aggregate:tower-cli-0.9.2--hdfd78af_1' locally
  tower-cli-0.9.2--hdfd78af_1: Pulling from seqeralabs/nf-aggregate
  ca7680d1025d: Pulling fs layer
  4f4fb700ef54: Pulling fs layer
  7bef15df9184: Pulling fs layer
  4f4fb700ef54: Verifying Checksum
  4f4fb700ef54: Download complete
  ca7680d1025d: Verifying Checksum
  ca7680d1025d: Download complete
  ca7680d1025d: Pull complete
  4f4fb700ef54: Pull complete
  7bef15df9184: Verifying Checksum
  7bef15df9184: Download complete
  7bef15df9184: Pull complete
  Digest: sha256:ddf632d8110b22317ba4b6e043ae1570c492e55819d9a78333e642e1612be705
  Status: Downloaded newer image for quay.io/seqeralabs/nf-aggregate:tower-cli-0.9.2--hdfd78af_1
  /usr/local/bin/tw: line 6: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
  
   ERROR: Unauthorized. Check your access token, workspace id and tower server url.

Work dir:
  /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/4edb0cdffc25f64c8ac8ecaccf3fdbec/work/43/d63dae1d3e6e7ad56b23fba6d4130c

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/4edb0cdffc25f64c8ac8ecaccf3fdbec/meta/nextflow.log' file for details
Execution cancelled -- Finishing pending tasks before exit
Nextflow stderr:
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