Report Page Tasks

Feature preview: https://dev.serratus.io/data

Features

• parameterize accession in URL (ex. https://dev.serratus.io/data?accession=ERR2756788)
• search field
• links to SRA, Trace, BAM
• basic family coverage heatmap
• D3.js visualizations
• add option to download summary (.summary, .json ?)
• normalize by # aligned reads (cvg * min(aln, 1000))

UI/UX

• search field: enter to submit

Development

• integrate D3 into React page
  • many methods: https://gist.github.com/alexcjohnson/a4b714eee8afd2123ee00cb5b3278a5f
• search: use setAccession hook instead of redirect
  • low priority, as it works fine right now - just could be better optimized for React

D3

• split by family row
• color legend
• expand family entries
• add external links (non-AMR)
• add external links (AMR)
• add score, pctid
• add other summary metadata
• dynamically compute text width
• NCBI Taxonomy Browser -> "taxa"
• add button to load more accessions
• show name of accession entries

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7.7.2020 mockup by @ababaian