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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 403 45

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 249 36

  3. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 144 48

  4. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 144 25

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 89 28

Repositories

Showing 10 of 181 repositories
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 47 GPL-3.0 19 23 5 Updated Mar 2, 2025
  • DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    seung-lab/DracoPy’s past year of commit activity
    C++ 89 Apache-2.0 28 11 2 Updated Feb 28, 2025
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.

    seung-lab/fastmorph’s past year of commit activity
    C++ 13 LGPL-3.0 3 3 0 Updated Feb 28, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 324 91 37 Updated Feb 27, 2025
  • pyspng-seunglab Public

    pyspng fork with updated install, compression, and CLI.

    seung-lab/pyspng-seunglab’s past year of commit activity
    Python 4 0 1 0 Updated Feb 27, 2025
  • compresso Public Forked from VCG/compresso

    Compresso: Efficient Compression of Segmentation Data For Connectomics

    seung-lab/compresso’s past year of commit activity
    C++ 4 4 3 0 Updated Feb 27, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 144 BSD-3-Clause 48 82 5 Updated Feb 27, 2025
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Feb 26, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 144 GPL-3.0 25 13 0 Updated Feb 26, 2025
  • cross-section Public

    Tools for computing properties of cross sections of 3D voxelized images.

    seung-lab/cross-section’s past year of commit activity
    C++ 3 LGPL-3.0 2 2 3 Updated Feb 22, 2025

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