Update CONTEXT_UNDERSTANDABILITY.qmd

CONTEXT_UNDERSTANDABILITY.qmd

@@ -17,7 +17,7 @@ Ecological Metadata Language (EML) is an XML schema. An EML instance (XML docume
 
 ### Key Information
 
--   EML schema <https://eml.ecoinformatics.org/eml-schema> 
+-   [EML Schema](https://eml.ecoinformatics.org/eml-schema)
 
 -   Mandatory for LTER, iLTER, OBIS, GBIF, Darwin Core Archive (DwC-A)
 
@@ -31,17 +31,17 @@ Tools or packages to help write EML:
 
 -   For data managers, coders: 
 
-    -   EML-R package: <https://cran.r-project.org/web/packages/EML/index.html>
+    -   [EML-R package](https://cran.r-project.org/web/packages/EML/index.html)
 
-    -   Postgresql database with fields compatible with EML <https://github.com/lter/LTER-core-metabase>  
+    -   [Postgresql database with fields compatible with EML](https://github.com/lter/LTER-core-metabase)
 
-    -   R-code for generating EML from LTER-metabase (built on EML-R package): <https://github.com/BLE-LTER/MetaEgress>
+    -   [R-code for generating EML from LTER-metabase (built on EML-R package)](https://github.com/BLE-LTER/MetaEgress)
 
-    -   EMLAssemblyline (built on EML-R package): <https://ediorg.github.io/EMLassemblyline/articles/overview.html> 
+    -   [EMLAssemblyline (built on EML-R package)](https://ediorg.github.io/EMLassemblyline/articles/overview.html)
 
 -   For scientists or those not inclined to write scripts
 
-    -   ezEML: <https://ezeml.edirepository.org/>
+    -   [ezEML](https://ezeml.edirepository.org/)
 
 ## ISO 19115
 
@@ -69,24 +69,21 @@ Content standard for describing geographic data sponsored by the International S
 
     -   ISO 19115 Geographic information -- Metadata: The ISO standard for documenting geospatial data. 
 
-    -   ISO 19115-2 Geographic information -- Metadata -- Part 2: Extensions for imagery and gridded data: An extension of ISO 19115 used to document information about imagery, gridded data, and remotely sensed data. The root of ISO 19115 metadata records will change from MD_Metadata to MI_Metadata when using ISO 19115-2. 
-
--   There is a biological extension (https://repository.oceanbestpractices.org/handle/11329/1281?show=full), but it is not very widely used.  In part this is because many search engines do not harvest this extension.
+    -   ISO 19115-2 Geographic information -- Metadata -- Part 2: Extensions for imagery and gridded data: An extension of ISO 19115 used to document information about imagery, gridded data, and remotely sensed data. The root of ISO 19115 metadata records will change from MD_Metadata to MI_Metadata when using ISO 19115-2.
 
 -   Usurped FGDC CSDGM - all users encouraged to migrate to ISO.
 
 -   Highly flexible for many uses compared FGDC CSDGM, but few required elements leaves room for incomplete metadata
 
 ### Top References
 
--   NOAA Workbook for ISO 19115-2 <https://www.ncei.noaa.gov/sites/default/files/2020-04/ISO%2019115-2%20Workbook_Part%20II%20Extentions%20for%20imagery%20and%20Gridded%20Data.pdf> 
+-   [NOAA Workbook for ISO 19115-2](https://www.ncei.noaa.gov/sites/default/files/2020-04/ISO%2019115-2%20Workbook_Part%20II%20Extentions%20for%20imagery%20and%20Gridded%20Data.pdf) 
 
--   Convert ISO to EML - <https://nceas.github.io/arcticdatautils/reference/convert_iso_to_eml.html> 
+-   [How to Convert ISO to EML](https://nceas.github.io/arcticdatautils/reference/convert_iso_to_eml.html) 
 
--   Work Flow Model -\
-    <https://www.fgdc.gov/metadata/iso-implementation-model-workflow> 
+-   [Work Flow Model](https://www.fgdc.gov/metadata/iso-implementation-model-workflow)
 
--   mdToolkit: <https://www.mdtoolkit.org/home> - mdEditor is a writer for ISO 19115 metadata which uses mdJSON as an intermediary and mdTranslator allows translation to different metadata formats
+-   [mdToolkit](https://www.mdtoolkit.org/home) - mdEditor is a writer for ISO 19115 metadata which uses mdJSON as an intermediary and mdTranslator allows translation to different metadata formats
 
 ## Minimum Information about any (x) Sequence (MIxS)
 
@@ -104,24 +101,20 @@ A set of checklists and packages for genomic sequence data
 
 ### Key Information
 
--   Pronounced "mix-ess"
-
--   Term search tool: <http://www.gensc.org/pages/standards/search-terms.html>?
+-   MIxS (pronounced MIX-ess) is a suite of checklists standards introduced the reporting of a breadth of environment-specific metadata variables to augment the genome-specific checklists.
 
--   MixS is a suite of checklists (pronounced MIX-ess) standards introduced the reporting of a breadth of environment-specific metadata variables to augment the genome-specific checklists.
+-   Enables mixing and matching of genome checklists and environmental-specific packages.
 
--   Thus enabling the mix and matching of genome checklists and environmental-specific packages.
-
--   [![MixS Structure](http://www.gensc.org/images/mixs_ext_graphic-1024x731.png)](http://www.gensc.org/pages/standards-intro.html)
+-   [![MIxS Structure](http://www.gensc.org/images/mixs_ext_graphic-1024x731.png)](http://www.gensc.org/pages/standards-intro.html)
 
 ### Top References
+
+-   [MIxS Term Search Tool](http://www.gensc.org/pages/standards/search-terms.html)
 
--   <https://genomicsstandardsconsortium.github.io/mixs/>
-
--   <https://www.gensc.org/mixs/> 
+-   [Genomic Standards Consortium term list](https://genomicsstandardsconsortium.github.io/mixs/)
 
--   <https://www.nature.com/articles/nbt.1823>
+-   [Minimum Information about Marker Gene Sequence (MIMARKS)](https://www.nature.com/articles/nbt.1823)
 
--   <https://github.com/GenomicsStandardsConsortium/mixs/wiki> 
+-   [MIxS GitHub repo](https://github.com/GenomicsStandardsConsortium/mixs)
 
--   <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3869023/>
+-   [Minimum Information about Sequence Data from the Built Environment (MIxS-BE)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3869023/)