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shooshtarilab

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  1. TMExplorer TMExplorer Public

    A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

    R 17 5

  2. scATAC.Explorer scATAC.Explorer Public

    A curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.

    R 7 1

  3. scRNAseq-Automated-Cell-Type-Labelling scRNAseq-Automated-Cell-Type-Labelling Public

    Jupyter Notebook 6

  4. ochroGWAS ochroGWAS Public

    Pipeline for automatic integration of open chromatin regions (peaks) and GWAS data.

    R 4 2

  5. open-chromatin-db open-chromatin-db Public

    JavaScript 2

  6. Clustering Clustering Public

    Clustering single cell rna-seq data

    R

Repositories

Showing 9 of 9 repositories
  • scATAC.Explorer Public

    A curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.

    shooshtarilab/scATAC.Explorer’s past year of commit activity
    R 7 1 0 0 Updated Nov 12, 2024
  • GraphComm Public
    shooshtarilab/GraphComm’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 1, 2024
  • GraphComm_old Public Forked from bhklab/GraphComm

    This repository is a fork of the official GraphComm project, tailored to seamlessly integrate with datasets fetched from TMExplorer. Additionally, significant enhancements have been made to increase user-friendliness and accessibility, reducing the level of technical expertise required to use GraphComm.

    shooshtarilab/GraphComm_old’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Jan 12, 2024
  • ochroGWAS Public

    Pipeline for automatic integration of open chromatin regions (peaks) and GWAS data.

    shooshtarilab/ochroGWAS’s past year of commit activity
    R 4 2 1 0 Updated Sep 27, 2022
  • Clustering Public

    Clustering single cell rna-seq data

    shooshtarilab/Clustering’s past year of commit activity
    R 0 0 0 0 Updated Sep 16, 2022
  • Subsemble_Cell_Type_Classifier Public
    shooshtarilab/Subsemble_Cell_Type_Classifier’s past year of commit activity
    Python 0 CC0-1.0 0 0 0 Updated Aug 18, 2022
  • TMExplorer Public

    A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

    shooshtarilab/TMExplorer’s past year of commit activity
    R 17 5 0 0 Updated Jun 1, 2022
  • scRNAseq-Automated-Cell-Type-Labelling Public
    shooshtarilab/scRNAseq-Automated-Cell-Type-Labelling’s past year of commit activity
    Jupyter Notebook 6 0 0 0 Updated Dec 16, 2021
  • open-chromatin-db Public
    shooshtarilab/open-chromatin-db’s past year of commit activity
    JavaScript 0 2 0 0 Updated Nov 27, 2018

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