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Documentation #2

Merged
merged 24 commits into from
Nov 14, 2021
Merged

Documentation #2

merged 24 commits into from
Nov 14, 2021

Commits on Aug 11, 2021

  1. Included nloptApi.h and CXX11 in the flags plus adapted the code to t… 

    …he nlopt library. Changed NAMESPACE and DESCRIPTION to include nloptr and nloptC.so respectively.
    @simonsays1980
    simonsays1980 committed Aug 11, 2021
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Commits on Aug 18, 2021

  1. Removed dynamic loading of NloptC, recompiled RcppExports and changed… 

    … attributes to RcppExport for mcmc_binomial_cc and mcmc_normult_cc. Package installs and runs.
    @simonsays1980
    simonsays1980 committed Aug 18, 2021
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Commits on Aug 19, 2021

  1. Changed all file endings from .cc to .cpp. Furthermore, changed the p… 

    …ointer in nlopt_optimize from std::vector to arma::vec<double>.memptr()
    @simonsays1980
    simonsays1980 committed Aug 19, 2021
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Commits on Sep 1, 2021

  1. Made a longer check on the relabeling algorithms of Stephens1997b and… 

    … Stephens1997a with Poisson and Binomial distributions. Removed many unused variables and hcnaged order in constructors.
    @simonsays1980
    simonsays1980 committed Sep 1, 2021
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Commits on Sep 3, 2021

  1. Tested Stephens1997a again as results are very often identical to the… 

    … ergodic average.
    @simonsays1980
    simonsays1980 committed Sep 3, 2021
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Commits on Sep 10, 2021

  1. Added another package to the DESCRIPTION file.

    @simonsays1980
    simonsays1980 committed Sep 10, 2021
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  2. Ran beautifier over C++ code (uncrustify) and styler over R code.

    @simonsays1980
    simonsays1980 committed Sep 10, 2021
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  3. Modified DESCRIPTION file. Only the License is missing.

    @simonsays1980
    simonsays1980 committed Sep 10, 2021
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Commits on Sep 11, 2021

  1. Fixed some bugs after running R CMD check.

    @simonsays1980
    simonsays1980 committed Sep 11, 2021
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Commits on Oct 5, 2021

  1. Started documentation

    @simonsays1980
    simonsays1980 committed Oct 5, 2021
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  2. Fixed a bug in subseq()

    @simonsays1980
    simonsays1980 committed Oct 5, 2021
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Commits on Oct 6, 2021

  1. Fixed bugs that occurred during R CMD check in the examples.

    @simonsays1980
    simonsays1980 committed Oct 6, 2021
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Commits on Oct 7, 2021

  1. Fixed some bugs and aggregated the documentation of mcmcoutputperm cl… 

    …asses into a single RD file and putting the rest to internal
    @simonsays1980
    simonsays1980 committed Oct 7, 2021
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Commits on Oct 12, 2021

  1. Fixed some bugs and modified the manuals.

    @simonsays1980
    simonsays1980 committed Oct 12, 2021
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Commits on Oct 16, 2021

  1. Modified manuals to avoid warnings in R CMD check

    @simonsays1980
    simonsays1980 committed Oct 16, 2021
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Commits on Oct 18, 2021

  1. Changed some Rd files

    @simonsays1980
    simonsays1980 committed Oct 18, 2021
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Commits on Oct 21, 2021

  1. Changed the documentation and fixed some bugs in the examples.

    @simonsays1980
    simonsays1980 committed Oct 21, 2021
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Commits on Oct 30, 2021

  1. Modified documentation to remove WARNINGS in R CMD check

    @simonsays1980
    simonsays1980 committed Oct 30, 2021
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Commits on Nov 2, 2021

  1. Modified the generics and set exported functions to @Keywords interna… 

    …l instead of @nor
    @simonsays1980
    simonsays1980 committed Nov 2, 2021
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Commits on Nov 3, 2021

  1. Fixed some bugs in the documentation.

    @simonsays1980
    simonsays1980 committed Nov 3, 2021
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Commits on Nov 6, 2021

  1. Fixed some warnings in the documentation.

    @simonsays1980
    simonsays1980 committed Nov 6, 2021
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Commits on Nov 7, 2021

  1. Fixed documentation on generics and some methods. devtools::check() r… 

    …uns without warnings
    @simonsays1980
    simonsays1980 committed Nov 7, 2021
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Commits on Nov 8, 2021

  1. Added .registration=TRUE to try out what it does.

    @simonsays1980
    simonsays1980 committed Nov 8, 2021
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Commits on Nov 11, 2021

  1. Changed inheritance to non-virtual in ParStudentInd.h

    @simonsays1980
    simonsays1980 committed Nov 11, 2021
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