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Add options and writable to exec, shell, run #139

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Jun 27, 2019
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@vsoch vsoch commented Jun 27, 2019

This pull request will allow the user to specify a list of options to each of exec, shell, and run, and also if the execution should be --writable. I've also updated the documentation (and docstrings) with these examples.

This will close #138

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
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vsoch commented Jun 27, 2019

@JayjeetAtGithub you can test this fix. First, remove all previous spython versions. Do this until it tells you it is installed:

pip uninstall spython

Then, clone this branch and install:

git clone -b add/options-writabl  https://github.com/singularityhub/singularity-cli
cd singularity-cli
python setup.py install

And then try the commands that were not working for you! I've updated the docs here to show them as well.

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@vsoch Thanks a lot! All well now.

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vsoch commented Jun 27, 2019

Ready to merge?

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Yep 😄

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vsoch commented Jun 27, 2019

You got it! Please give me a few minutes to release to pypi, I will post the link here when it's done.

@vsoch vsoch merged commit 2a4b05f into master Jun 27, 2019
@vsoch vsoch deleted the add/options-writabl branch June 27, 2019 13:12
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vsoch commented Jun 27, 2019

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--writable option for execute/run not working in spython
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