Transition to pyproject

.flake8

@@ -0,0 +1,3 @@
+[flake8]
+max-line-length = 99
+exclude = .tox, .git, __pycache__, .ipynb_checkpoints

.github/workflows/tests.yml

@@ -59,7 +59,7 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install package and dependencies
-      run: pip install invoke rundoc .
+      run: pip install invoke rundoc tomli .
     - name: invoke readme
       run: invoke readme
 
@@ -119,6 +119,6 @@ jobs:
       name: Install dependencies - Windows with Python 3.6
       run: python -m pip install pywinpty==2.0.1
     - name: Install package and dependencies
-      run: pip install invoke jupyter matplotlib .
+      run: pip install invoke jupyter matplotlib tomli .
     - name: invoke tutorials
       run: invoke tutorials

Makefile

@@ -81,11 +81,9 @@ install-test: clean-build clean-pyc ## install the package and test dependencies
 install-develop: clean-build clean-pyc ## install the package in editable mode and dependencies for development
 	pip install -e .[dev]
 
-MINIMUM := $(shell sed -n '/install_requires = \[/,/]/p' setup.py | grep -v -e '[][]' | sed 's/ *\(.*\),$?$$/\1/g' | tr '>' '=')
-
 .PHONY: install-minimum
 install-minimum: ## install the minimum supported versions of the package dependencies
-	pip install $(MINIMUM)
+	invoke install_minimum
 
 .PHONY: check-dependencies
 check-dependencies: ## test if there are any broken dependencies
@@ -164,8 +162,7 @@ serve-docs: view-docs ## compile the docs watching for changes
 
 .PHONY: dist
 dist: clean ## builds source and wheel package
-	python setup.py sdist
-	python setup.py bdist_wheel
+	python -m build --wheel --sdist
 	ls -l dist
 
 .PHONY: publish-confirm

pyproject.toml

@@ -0,0 +1,193 @@
+# Project Metadata
+
+[project]
+name = 'orion'
+description='Orion is a machine learning library built for unsupervised time series anomaly detection.'
+authors = [{ name = 'MIT Data To AI Lab', email = 'dailabmit@gmail.com' }]
+classifiers = [
+    'Development Status :: 2 - Pre-Alpha',
+    'Intended Audience :: Developers',
+    'License :: OSI Approved :: MIT License',
+    'Natural Language :: English',
+    'Programming Language :: Python :: 3',
+    'Programming Language :: Python :: 3.8',
+    'Programming Language :: Python :: 3.9',
+    'Programming Language :: Python :: 3.10',
+    'Programming Language :: Python :: 3.11',
+]
+keywords = ['orion', 'anomaly-detection', 'timeseries']
+version='0.6.1.dev0'
+license = { text = 'MIT license' }
+requires-python = '>=3.8,<3.12'
+readme = 'README.md'
+dependencies = [
+    'tensorflow>=2.2,<2.15',
+    'numpy>=1.17.5,<2',
+    'pandas>=1,<2',
+    'numba>=0.48,<0.60',
+    's3fs>=0.2.2,<0.5',
+    'mlblocks>=0.6.1,<0.7',
+    'ml-stars>=0.2,<0.3',
+    'scikit-learn>=0.22.1,<1.2',
+    'tabulate>=0.8.3,<0.9',
+    'pyts>=0.11,<0.14',
+    'torch>=1.4',
+    'azure-cognitiveservices-anomalydetector>=0.3,<0.4',
+    'xlsxwriter>=1.3.6,<1.4',
+    'tqdm>=4.36.1',
+    'stumpy>=1.7,<1.11',
+    'ncps',
+
+    # fix conflict
+    'protobuf<4',
+
+    # fails on python 3.6
+    'opencv-python<4.7',
+]
+
+[project.optional-dependencies]
+test = [
+    'pytest>=3.4.2',
+    'pytest-cov>=2.6.0',
+    'rundoc>=0.4.3,<0.5',
+    'pytest-runner>=2.11.1',
+    'tomli>=2.0.0,<3',
+]
+dev = [
+    'orion[test]',
+
+    # general
+    'pip>=9.0.1',
+    'bumpversion>=0.5.3,<0.6',
+    'watchdog>=0.8.3,<0.11',
+
+    # docs
+    'docutils>=0.12,<0.18',
+    'm2r2>=0.2.5,<0.3',
+    'nbsphinx>=0.5.0,<0.7',
+    'Sphinx>=3,<3.3',
+    'pydata-sphinx-theme<0.5',
+    'markupsafe<2.1.0',
+    'ipython>=6.5,<9',
+    'Jinja2>=2,<3',
+
+    # fails on Sphinx < v3.4
+    'alabaster<=0.7.12',
+    # fails on Sphins < v5.0
+    'sphinxcontrib-applehelp<1.0.8',
+    'sphinxcontrib-devhelp<1.0.6',
+    'sphinxcontrib-htmlhelp<2.0.5',
+    'sphinxcontrib-serializinghtml<1.1.10',
+    'sphinxcontrib-qthelp<1.0.7',
+
+    # style check
+    'flake8>=3.7.7,<4',
+    'isort>=4.3.4,<5',
+
+    # fix style issues
+    'autoflake>=1.2,<2',
+    'autopep8>=1.4.3,<2',
+    'importlib-metadata<5',
+
+    # distribute on PyPI
+    'twine>=1.10.0,<4',
+    'wheel>=0.30.0',
+
+    # Advanced testing
+    'coverage>=4.5.1,<6',
+    'tox>=2.9.1,<4',
+    'invoke',
+]
+
+[project.urls]
+"Source Code"= "https://github.com/sintel-dev/Orion/"
+"Issue Tracker" = "https://github.com/sintel-dev/Orion/issues"
+"Changes" = "https://github.com/sintel-dev/Orion/blob/main/HISTORY.md"
+"Chat" = "https://join.slack.com/t/sintel-space/shared_invite/zt-q147oimb-4HcphcxPfDAM0O9_4PaUtw"
+
+[project.entry-points]
+orion = { main = 'orion.__main__:main' }
+mlblocks = { primitives = 'orion:MLBLOCKS_PRIMITIVES', pipelines = 'orion:MLBLOCKS_PIPELINES' }
+
+[tool.setuptools]
+include-package-data = true
+license-files = ['LICENSE']
+
+[tool.setuptools.packages.find]
+include = ['orion', 'orion.*']
+namespaces = false
+
+[tool.setuptools.package-data]
+'*' = [
+    'AUTHORS.rst',
+    'CONTRIBUTING.rst',
+    'HISTORY.md',
+    'README.md',
+    '*.md',
+    '*.rst',
+    'conf.py',
+    'Makefile',
+    'make.bat',
+    '*.jpg',
+    '*.png',
+    '*.gif'
+]
+'tests' = ['*']
+
+[tool.setuptools.exclude-package-data]
+'*' = [
+    '* __pycache__',
+    '*.py[co]',
+]
+
+[tool.setuptools.dynamic]
+version = {attr = 'orion.__version__'}
+
+[tool.isort]
+line_length = 99
+lines_between_types = 0
+multi_line_output = 4
+not_skip = ['__init__.py']
+use_parentheses = true
+include_trailing_comment = true
+
+[tool.pytest.ini_options]
+collect_ignore = ['pyproject.toml']
+
+[tool.bumpversion]
+current_version = '0.6.1.dev0'
+parse = '(?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\.(?P<release>[a-z]+)(?P<candidate>\d+))?'
+serialize = [
+    '{major}.{minor}.{patch}.{release}{candidate}',
+    '{major}.{minor}.{patch}'
+]
+search = '{current_version}'
+replace = '{new_version}'
+regex = false
+ignore_missing_version = false
+tag = true
+sign_tags = false
+tag_name = 'v{new_version}'
+tag_message = 'Bump version: {current_version} → {new_version}'
+allow_dirty = false
+commit = true
+message = 'Bump version: {current_version} → {new_version}'
+commit_args = ''
+
+[tool.bumpversion.parts.release]
+first_value = 'dev'
+optional_value = 'release'
+values = [
+    'dev',
+    'release'
+]
+
+[tool.bumpversion.files]
+filename = "orion/__init__.py"
+search = "__version__ = '{current_version}'"
+replace = "__version__ = '{new_version}'"
+
+[build-system]
+requires = ['setuptools', 'wheel']
+build-backend = 'setuptools.build_meta'
+