##Update - A team of talented people made the pyrosetta notebooks that I had only dreamed of having. Many thanks to that team for the wonderful product they created. My contributions were very modest & I only hope to highlight their significant work.
See https://github.com/RosettaCommons/PyRosetta.notebooks & https://www.preprints.org/manuscript/202002.0097/v1
#This is an initial organization of the code examples that I have been working on this is in preparation for working on a full online book version This code is a mix of old and new pyrosetta bindings.
membrane protein has a gif showing the simulation that is designed
poses and dataframes has lots of words
symmetry has lots of maths
1/2 testers tell me that enzdes works out of the box!
and please ignore sjb_util unless you are trying to run examples that need it. It has not been cleaned up for the demos