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smith-chem-wisc · Dec 17, 2024 · fac3c40 · fac3c40
1 parent 1b8f322
commit fac3c40
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/mzLib/Test/Transcriptomics/TestOligoWithSetMods.cs b/mzLib/Test/Transcriptomics/TestOligoWithSetMods.cs
@@ -128,11 +128,11 @@ public static void TestInequality_DifferentParentSameDigestionProduct(string seq
         {
             var digestionParams = new RnaDigestionParams(rnase: enzyme, minLength: 1, maxMissedCleavages: 0);
 
-            var oligo1 = new RNA(sequence1)
+            var oligo1 = new RNA(sequence1, "", "rna1", "", "")
                 .Digest(digestionParams, [], [])
                 .First();
 
-            var oligo2 = new RNA(sequence2)
+            var oligo2 = new RNA(sequence2, "", "rna3", "", "")
                 .Digest(digestionParams, [], [])
                 .First();
 

diff --git a/mzLib/Transcriptomics/RNA.cs b/mzLib/Transcriptomics/RNA.cs
@@ -23,7 +23,7 @@ public RNA(string sequence, IHasChemicalFormula? fivePrimeTerm = null, IHasChemi
         /// </summary>
         /// <param name="sequence"></param>
         /// <param name="name"></param>
-        /// <param name="identifier"></param>
+        /// <param name="accession"></param>
         /// <param name="organism"></param>
         /// <param name="databaseFilePath"></param>
         /// <param name="fivePrimeTerminus"></param>
@@ -33,12 +33,12 @@ public RNA(string sequence, IHasChemicalFormula? fivePrimeTerm = null, IHasChemi
         /// <param name="isDecoy"></param>
         /// <param name="geneNames"></param>
         /// <param name="databaseAdditionalFields"></param>
-        public RNA(string sequence, string name, string identifier, string organism, string databaseFilePath,
+        public RNA(string sequence, string name, string accession, string organism, string databaseFilePath,
             IHasChemicalFormula? fivePrimeTerminus = null, IHasChemicalFormula? threePrimeTerminus = null,
             IDictionary<int, List<Modification>>? oneBasedPossibleModifications = null,
             bool isContaminant = false, bool isDecoy = false, List<Tuple<string, string>> geneNames = null,
             Dictionary<string, string>? databaseAdditionalFields = null)
-            : base(sequence, name, identifier, organism, databaseFilePath, fivePrimeTerminus, threePrimeTerminus,
+            : base(sequence, name, accession, organism, databaseFilePath, fivePrimeTerminus, threePrimeTerminus,
                 oneBasedPossibleModifications, isContaminant, isDecoy, geneNames, databaseAdditionalFields)
         {