Code

Spectral decon#675

Code

Open

Alexander-Sol wants to merge 48 commits intosmith-chem-wisc:mastersmith-chem-wisc/mzLib:masterfrom Alexander-Sol:SpectralDeconAlexander-Sol/mzLib:SpectralDeconCopy head branch name to clipboard

+11,597-63

Commits

Commits on Nov 6, 2022

• Moved Proteomics to Mass Spectrometry, adjusted namespace

  Alexander-Sol

  committed
  6a4571d

  Copy full SHA for 6a4571d

• Changed using directives and issues with proteases.tsv path

  Alexander-Sol

  committed
  1695531

  Copy full SHA for 1695531

• Merged the proteomics refactor

  Alexander-Sol

  committed
  f4c0c14

  Copy full SHA for f4c0c14

• Fixed accidental deletino in ProteaseDictionary

  Alexander-Sol

  committed
  98103c2

  Copy full SHA for 98103c2

• Added fields to SpectralDeconParams

  Alexander-Sol

  committed
  db1c7a8

  Copy full SHA for db1c7a8

Commits on Nov 7, 2022

• Further changes to spectralDeconAlgorithm

  Alexander-Sol

  committed
  36fabb1

  Copy full SHA for 36fabb1

• Restructured checks for DeconParameters

  Alexander-Sol

  committed
  3866579

  Copy full SHA for 3866579

• Changed Masses and Intesities field in IsotopicDistribution to return double[]

  Alexander-Sol

  committed
  6937520

  Copy full SHA for 6937520

• Changed syntax

  Alexander-Sol

  committed
  18bd83f

  Copy full SHA for 18bd83f

Commits on Nov 9, 2022

• minor commit

  Alexander-Sol

  committed
  c04dff3

  Copy full SHA for c04dff3

Commits on Nov 10, 2022

• minor commit

  Alexander-Sol

  committed
  70fcbf0

  Copy full SHA for 70fcbf0

• Change CompareTo method within DoubleRange to adhere to conventions

  Alexander-Sol

  committed
  0ed3103

  Copy full SHA for 0ed3103

• Amended comment

  Alexander-Sol

  committed
  e0dc36c

  Copy full SHA for e0dc36c

• Fixed merge conflicts

  Alexander-Sol

  committed
  7ac1c9b

  Copy full SHA for 7ac1c9b

• minor commit

  Alexander-Sol

  committed
  e1a6fb2

  Copy full SHA for e1a6fb2

• Fixed merge conflicts

  Alexander-Sol

  committed
  bc5a19a

  Copy full SHA for bc5a19a

• Created MinimalSpectrum class

  Alexander-Sol

  committed
  db7bacb

  Copy full SHA for db7bacb

• Minor commit

  Alexander-Sol

  committed
  2f5befb

  Copy full SHA for 2f5befb

• Tenatively finished IndexEnvelopes method in SpectralDeconAlgo

  Alexander-Sol

  committed
  ce6cb0d

  Copy full SHA for ce6cb0d

• Started testing

  Alexander-Sol

  committed
  f9fba02

  Copy full SHA for f9fba02

• Minor commit

  Alexander-Sol

  committed
  a665eb6

  Copy full SHA for a665eb6

Commits on Nov 11, 2022

• Fleshed out tests

  Alexander-Sol

  committed
  82895d2

  Copy full SHA for 82895d2

Commits on Nov 14, 2022

• Broke some tests

  Alexander-Sol

  committed
  902bc46

  Copy full SHA for 902bc46

• Fixed broken tests

  Alexander-Sol

  committed
  8e34eaa

  Copy full SHA for 8e34eaa

• Minor commit

  Alexander-Sol

  committed
  9ff659b

  Copy full SHA for 9ff659b

• Fixed errors in envelope binning/indexing

  Alexander-Sol

  committed
  543482a

  Copy full SHA for 543482a

• Changed MostAbundantMonoisotopicMass to MostAbundantMass in PeptideWithSetMods

  Alexander-Sol

  committed
  377d9a3

  Copy full SHA for 377d9a3

• Changed MostAbundantMonoisotopicMass to MostAbundantMass in PeptideWithSetMods

  Alexander-Sol

  committed
  0bdfa43

  Copy full SHA for 0bdfa43

• Finished first test for Spectral Deconvolution

  Alexander-Sol

  committed
  b175da7

  Copy full SHA for b175da7

• Fixed typo

  Alexander-Sol

  committed
  f7751d7

  Copy full SHA for f7751d7

Commits on Nov 16, 2022

• minor commit

  Alexander-Sol

  committed
  41cbf07

  Copy full SHA for 41cbf07

• First stab at spectral Deconvolute function

  Alexander-Sol

  committed
  6bdd270

  Copy full SHA for 6bdd270

• minor commit before 2D Array Refactor

  Alexander-Sol

  committed
  efdb317

  Copy full SHA for efdb317

• 2D array refactor

  Alexander-Sol

  committed
  15918db

  Copy full SHA for 15918db

Commits on Nov 17, 2022

• Started Scorer and ScoringAlgo classes

  Alexander-Sol

  committed
  37233a5

  Copy full SHA for 37233a5

• Edited normalization methods within SpectralSimilarity to remove side effects, made these methods public

  Alexander-Sol

  committed
  53c47ad

  Copy full SHA for 53c47ad

• Fixed Merge Conflicts

  Alexander-Sol

  committed
  0f14018

  Copy full SHA for 0f14018

• Minor commit

  Alexander-Sol

  committed
  096d62d

  Copy full SHA for 096d62d

• Finished score strategy

  Alexander-Sol

  committed
  d6fe050

  Copy full SHA for d6fe050

Commits on Nov 18, 2022

• Commit before testing begins

  Alexander-Sol

  committed
  3bfa606

  Copy full SHA for 3bfa606

• SpectralDecon passing first test

  Alexander-Sol

  committed
  a974000

  Copy full SHA for a974000

Commits on Nov 30, 2022

• minor refactoring

  Alexander-Sol

  committed
  83fb03d

  Copy full SHA for 83fb03d

• Merge branch 'master' into SpectralDecon

  Alexander-Sol

  committed
  54caec7

  Copy full SHA for 54caec7

Commits on Dec 1, 2022

• Added dummy test

  Alexander-Sol

  committed
  c6961db

  Copy full SHA for c6961db

Commits on Dec 12, 2022

• Updated nuspec file to reflect refactor

  Alexander-Sol

  committed
  1193d17

  Copy full SHA for 1193d17

• Changed MassSpectrometry.Proteomics* namespace back to Proteomics*

  Alexander-Sol

  committed
  c9174ea

  Copy full SHA for c9174ea

• Added ScorerTest

  Alexander-Sol

  committed
  b744f49

  Copy full SHA for b744f49

Commits on Jan 24, 2023

• Merge branch 'master' into SpectralDecon

  Alexander-Sol

  authored
  f1a4f28

  Copy full SHA for f1a4f28