Version 1.0

Developed under https://github.com/snail123815/IMG_scripts

extractPicture_PositionsAndInfo.tsv

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+CornerSize	x	y	size
+TL	128	920	201
+TR	1380	808	201
+ML	1040	1856	201
+MR	1860	1588	201
+BL	680	2964	201
+BR	1600	2828	201
+
+CentreSize	x	y	size
+
+WidthHeight	x1	y1	Width	Height
+
+# Include 'removePadding' if you need to remove certain padding
+# Only valid under 'WidthHeight' or 'TwoPositions'
+removePadding	52	376	2396	3068
+
+TwoPositions	x1	y1	x2	y2
+
+# Polygon accepts recorded marco string from imageJ (FIJI) (eg 'makePolygon(852,588,660,1184,1288,1216);')
+# 'Plugins' -> 'Marcos' -> 'Record...'
+Polygon	makePolygon();
+
+END_POSITION # Location parse will stop here. DO NOT DELETE THIS LINE
+
+# measure in ['centreDisk', 'square', 'polygon']
+# colour will be default if empty
+# Order will be kept in plotting
+# You can add any column you like, but keep 'measure' and 'colour'
+sampleInfo	strain	measure	colour
+TL	A_c	centreDisk	firebrick
+BR	A_x	centreDisk	tomato
+TR	A_y	centreDisk	lightsalmon
+BL	B_c	centreDisk	darkblue
+MR	B_x	centreDisk	royalblue
+ML	B_y	centreDisk	lightsteelblue
+
+END_INFO # DO NOT DELETE THIS LINE

funcs/__init__.py

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+from .parseMetadata import getInfo, getPositions, getPosToCrop
+from .changeName import changeFileName, getScanTime, determinePrefixExtension, determineExtension
+from .misc import createFolders
+from .measureImages import measureImgs
+from .plotting import plotMeasured
+from .crop import crop