Syntax correction partial

extractPicAndMeasure.py

@@ -206,7 +206,7 @@
             except IndexError:
                 nextGroupStart = len(fileList)
 
-            if i != 0:
+            if i != 0: # Multiple position files
                 posDict = getPositions(sampleInfoTsvPath)
                 posToCrop = getPosToCrop(posDict, useCroppedImg, locFromCropped)
             # Prepare cropping files
@@ -216,7 +216,7 @@
             filePathList = [os.path.join(imgPath, file) for file in subFileList]
             threadPool = ThreadPoolExecutor(max_workers=os.cpu_count())
             futures = []
-            for i, file in enumerate(filePathList):
+            for i, file in enumerate(filePathList): # repeated "i"
                 future = threadPool.submit(
                     crop, file, posToCrop, targetPaths,
                     paddingPos=paddingPos,
@@ -265,7 +265,7 @@
 
     if measure:
 
-        threadPool = ThreadPoolExecutor(max_workers=8)
+        threadPool = ThreadPoolExecutor(max_workers=1)
         futures = []
 
         for folder in sampleInfo:

funcs/measureImages.py

@@ -8,8 +8,17 @@
 from funcs import determineExtension
 
 
-def measureImgs(path, dictOldScanTime=None, measureType='centreDisk', polygons=[(0, 0, 1, 0, 0, 1), ], percentage=1.0, forceUseFileNumber=False, fileNumberTimeInterval=1) -> np.ndarray:
-    """Measure all images in path\n
+def measureImgs(
+    path,
+    dictOldScanTime=None,
+    measureType='centreDisk',
+    polygons=[(0, 0, 1, 0, 0, 1), ],
+    percentage=1.0,
+    forceUseFileNumber=False,
+    fileNumberTimeInterval=1
+) -> tuple[str, np.ndarray]:
+    """
+    Measure all images in path\n
     Return a numpy array of shape (len(files), 2).\n
 
     Args:\n