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singularity is depricated #6

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singularity is depricated #6

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b524d55
same here. singularity is depricated
visze Jan 15, 2021
1970424
using container in Snakefile
visze Jan 15, 2021
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2 changes: 1 addition & 1 deletion {{ cookiecutter.repo_name }}/workflow/Snakefile
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Expand Up @@ -5,7 +5,7 @@
report: "report/workflow.rst"

# Allow users to fix the underlying OS via singularity.
singularity: "docker://continuumio/miniconda3"
container: "docker://continuumio/miniconda3"


rule all:
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2 changes: 1 addition & 1 deletion {{ cookiecutter.repo_name }}/workflow/rules/common.smk
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Expand Up @@ -3,7 +3,7 @@ import pandas as pd

# this container defines the underlying OS for each job when using the workflow
# with --use-conda --use-singularity
singularity: "docker://continuumio/miniconda3"
container: "docker://continuumio/miniconda3"

##### load config and sample sheets #####

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