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fix wrong params name
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kilpert committed Sep 6, 2021
1 parent 5526842 commit f816550
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions workflow/rules/trim.smk
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ rule cutadapt_pe:
log:
"logs/cutadapt/{sample}-{unit}.log",
params:
others=config["params"]["cutadapt-pe"],
extra=config["params"]["cutadapt-pe"],
adapters=lambda w: str(units.loc[w.sample].loc[w.unit, "adapters"]),
threads: 8
wrapper:
Expand All @@ -48,7 +48,7 @@ rule cutadapt_se:
log:
"logs/cutadapt/{sample}-{unit}.log",
params:
others=config["params"]["cutadapt-se"],
extra=config["params"]["cutadapt-se"],
adapters_r1=lambda w: str(units.loc[w.sample].loc[w.unit, "adapters"]),
threads: 8
wrapper:
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