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perf: autobump bio/freebayes #3206

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Sep 13, 2024
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perf: autobump bio/freebayes #3206

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f3168aa
perf: update bio/freebayes/environment.yaml.
snakedeploy-bot[bot] Sep 13, 2024
60792d5
perf: update env pinning.
snakedeploy-bot[bot] Sep 13, 2024
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27 changes: 18 additions & 9 deletions bio/freebayes/environment.linux-64.pin.txt
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Expand Up @@ -16,48 +16,57 @@ https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.1.0-hc0a3c3a_1.cond
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.33.1-heb4867d_0.conda#0d3c60291342c0c025db231353376dfb
https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-he02047a_3.conda#fcd2016d1d299f654f81021e27496818
https://conda.anaconda.org/conda-forge/linux-64/jsoncpp-1.9.6-h84d6215_0.conda#1190da4988807db89b31e2173128892f
https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.21-h4bc722e_0.conda#36ce76665bf67f5aac36be7a0d21b7f3
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-he02047a_3.conda#efab66b82ec976930b96d62a976de8e7
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.1.0-h69a702a_1.conda#591e631bc1ae62c64f2ab4f66178c097
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.1.0-h4852527_1.conda#bd2598399a70bb86d8218e95548d735e
https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2#7245a044b4a1980ed83196176b78b73a
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h4ab18f5_6.conda#27329162c0dc732bcf67a4e0cd488125
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-h4ab18f5_1.conda#57d7dc60e9325e3de37ff8dffd18e814
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-he02047a_1.conda#70caf8bb6cf39a0b6b7efc885f51c0fe
https://conda.anaconda.org/conda-forge/linux-64/sed-4.8-he412f7d_0.tar.bz2#7362f0042e95681f5d371c46c83ebd08
https://conda.anaconda.org/bioconda/linux-64/wfa2-lib-2.3.5-h4ac6f70_2.tar.bz2#a8d983f00756b637e7254926d723eeaf
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.1-hf5e1c6e_2.tar.bz2#55aacbd977c83d6d4849c91310ef48c5
https://conda.anaconda.org/conda-forge/linux-64/eigen-3.4.0-h00ab1b0_0.conda#b1b879d6d093f55dd40d58b5eb2f0699
https://conda.anaconda.org/conda-forge/linux-64/jsoncpp-1.9.5-h4bd325d_1.tar.bz2#ae7f50dd1e78c7e78b5d2cf7062e559d
https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-he8f35ee_3.conda#4fab9799da9571266d05ca5503330655
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-he02047a_3.conda#9aba7960731e6b4547b3a52f812ed801
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.1.0-h69a702a_1.conda#16cec94c5992d7f42ae3f9fa8b25df8d
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.0-hde9e2c9_0.conda#18aa975d2094c34aef978060ae7da7d8
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.1-hadc24fc_0.conda#36f79405ab16bf271edb55b213836dac
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h4845f30_101.conda#d453b98d9c83e71da0741bb0ff4d76bc
https://conda.anaconda.org/bioconda/linux-64/wfa2-lib-2.3.5-h4ac6f70_1.tar.bz2#662d2ca04fe75c7e6615933f286e89fe
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-h4ab18f5_6.conda#559d338a4234c2ad6e676f460a093e67
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.1-h4ab18f5_1.conda#9653f1bf3766164d0e65fa723cabbc54
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda#4d056880988120e29d75bfff282e0f45
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
https://conda.anaconda.org/conda-forge/linux-64/libasprintf-devel-0.22.5-he8f35ee_3.conda#1091193789bb830127ed067a9e01ac57
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.27-pthreads_hac2b453_1.conda#ae05ece66d3924ac3d48b4aa3fa96cec
https://conda.anaconda.org/conda-forge/linux-64/parallel-20240722-ha770c72_0.conda#acad361a391f190dc2fa629a2814fdcf
https://conda.anaconda.org/conda-forge/linux-64/python-3.12.3-hab00c5b_0_cpython.conda#2540b74d304f71d3e89c81209db4db84
https://conda.anaconda.org/conda-forge/linux-64/python-3.12.5-h2ad013b_0_cpython.conda#9c56c4df45f6571b13111d8df2448692
https://conda.anaconda.org/conda-forge/linux-64/gettext-0.22.5-he02047a_3.conda#c7f243bbaea97cd6ea1edd693270100e
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-23_linux64_openblas.conda#96c8450a40aa2b9733073a9460de972c
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.8.0-hca28451_1.conda#b8afb3e3cb3423cc445cf611ab95fdb0
https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.0-hbbe4b11_0.conda#657ea309ad90675ef144e7d27a271ab9
https://conda.anaconda.org/conda-forge/noarch/setuptools-73.0.1-pyhd8ed1ab_0.conda#f0b618d7673d1b2464f600b34d912f6f
https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
https://conda.anaconda.org/conda-forge/noarch/wheel-0.44.0-pyhd8ed1ab_0.conda#d44e3b085abcaef02983c6305b84b584
https://conda.anaconda.org/bioconda/linux-64/htslib-1.20-h5efdd21_2.tar.bz2#f0923cdb85b44dc77bdead8018645ea9
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-23_linux64_openblas.conda#eede29b40efa878cbe5bdcb767e97310
https://conda.anaconda.org/conda-forge/linux-64/libidn2-2.3.7-hd590300_0.conda#2b7b0d827c6447cc1d85dc06d5b5de46
https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyh8b19718_1.conda#6c78fbb8ddfd64bcb55b5cbafd2d2c43
https://conda.anaconda.org/conda-forge/linux-64/gsl-2.7-he838d99_0.tar.bz2#fec079ba39c9cca093bf4c00001825de
https://conda.anaconda.org/bioconda/linux-64/samtools-1.20-h50ea8bc_1.tar.bz2#1a4c52f8079fea1b18b3e4bd329bab3a
https://conda.anaconda.org/conda-forge/linux-64/wget-1.21.4-hda4d442_0.conda#361e96b664eac64a33c20dfd11affbff
https://conda.anaconda.org/bioconda/linux-64/bcftools-1.20-h8b25389_1.tar.bz2#7dea9d0b49ecf4a553472add3d297729
https://conda.anaconda.org/bioconda/linux-64/tabixpp-1.1.2-h27d5293_3.tar.bz2#bd4c049e66f9d67590d895862a4b97e5
https://conda.anaconda.org/bioconda/linux-64/vcflib-1.0.9-hdcf5f25_6.tar.bz2#67a6e1c98e071c43b3c5ecf0ce6b1e63
https://conda.anaconda.org/bioconda/linux-64/freebayes-1.3.8-h6a68c12_0.tar.bz2#8c655248f82c253a7b19504887e425c9
https://conda.anaconda.org/bioconda/linux-64/vcflib-1.0.10-hdcf5f25_0.tar.bz2#907874b5a298b7fb0a97b4d55c11f45e
https://conda.anaconda.org/bioconda/linux-64/freebayes-1.3.8-h6a68c12_2.tar.bz2#6de8f09085a87fe8d356da3a263a7b56
2 changes: 1 addition & 1 deletion bio/freebayes/environment.yaml
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Expand Up @@ -5,7 +5,7 @@ channels:
dependencies:
- freebayes =1.3.8
- bcftools =1.20
- vcflib =1.0.9
- vcflib =1.0.10
- htslib =1.20
- parallel =20240722
- bedtools =2.31.1
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