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qframe and tframe don't work #615

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apcamargo opened this issue Oct 5, 2022 · 2 comments
Open

qframe and tframe don't work #615

apcamargo opened this issue Oct 5, 2022 · 2 comments

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@apcamargo
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In mmseqs convertalis, qframe and tframe should make the output have the ORF frame (-3 to +3). But these arguments don't work.

I couldn't find them in the source code of convertalignments.cpp, so I assume they are not implemented yet. Is that correct?
@wyim-pgl
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Same problem is here.

@HuixinJin
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same here. does anyone have a solution now?

ChunShow added a commit to ChunShow/MMseqs2 that referenced this issue Jan 18, 2024
@ChunShow
solve soedinglab#615 issue
0da98a6
milot-mirdita pushed a commit that referenced this issue May 21, 2024
@ChunShow
Implement qframe, tframe in convertalis (#615, #803)
417f22f
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@wyim-pgl @apcamargo @HuixinJin